Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g77 ATGAAGGGTCATGAGCCCCGTTCAAGTTCCTCCTGTGCAGCTTGCAAGTTCTTGAAAAGGAGATGCACTCCCAATTGTATATTCGCACCTTACTTCCGGTCCGATGAGCCCAAGAAATTCGCCAAAGTTCACAAGGTGTTTGGTGCCAGCAATGTGAGCAAGATCCTGGTTGAAGTCCCTGAGGAGCAACGTGAGGACACTGTCAATTCTCTTGCCTATGAGGCTGAGGCCAGGCTTAGAGACCCTGTATATGGTTGCATTGGCGCCATAGCTTTGCTCCAAAGAAAGATGGTTGAGCTCCAACATGATCTCGCCATTGCCAGAGCCCGTCTCGCCCGCTATACCATGCCCGCTTCCTCCACCTCTTCCATCTTCCATGGCAGCCTGGCCATGGCCGGTTTCCAAGACTTTCCGGGCTGCAGCGGCATATTTGACGGTTTCAGCCACCTGAATTCCATGGAGTTGAATCAGCCTGTGGCCATCAATGATTTCAGCCAACCCCCATTTCAGTTGTGA 516 51.94 MKGHEPRSSSSCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIARARLARYTMPASSTSSIFHGSLAMAGFQDFPGCSGIFDGFSHLNSMELNQPVAINDFSQPPFQL* 172
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 817193 817709 - Vvi13g77 Vvi13g77 773863
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g77 171 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vvi13g77 171 Coils Coil 90 110 - -
Vvi13g77 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 166 - -
Vvi13g77 171 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vvi13g77 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 166 - -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13915 PF03195 LOB 2.10E-39 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g77 - - vvi:100243201 348.591