Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g77	ATGAAGGGTCATGAGCCCCGTTCAAGTTCCTCCTGTGCAGCTTGCAAGTTCTTGAAAAGGAGATGCACTCCCAATTGTATATTCGCACCTTACTTCCGGTCCGATGAGCCCAAGAAATTCGCCAAAGTTCACAAGGTGTTTGGTGCCAGCAATGTGAGCAAGATCCTGGTTGAAGTCCCTGAGGAGCAACGTGAGGACACTGTCAATTCTCTTGCCTATGAGGCTGAGGCCAGGCTTAGAGACCCTGTATATGGTTGCATTGGCGCCATAGCTTTGCTCCAAAGAAAGATGGTTGAGCTCCAACATGATCTCGCCATTGCCAGAGCCCGTCTCGCCCGCTATACCATGCCCGCTTCCTCCACCTCTTCCATCTTCCATGGCAGCCTGGCCATGGCCGGTTTCCAAGACTTTCCGGGCTGCAGCGGCATATTTGACGGTTTCAGCCACCTGAATTCCATGGAGTTGAATCAGCCTGTGGCCATCAATGATTTCAGCCAACCCCCATTTCAGTTGTGA	516	51.94	MKGHEPRSSSSCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIARARLARYTMPASSTSSIFHGSLAMAGFQDFPGCSGIFDGFSHLNSMELNQPVAINDFSQPPFQL*	172

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
13	817193	817709	-	Vvi13g77	Vvi13g77	773863

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g77	171	ProSiteProfiles	LOB domain profile.	10	111	IPR004883	-
	Vvi13g77	171	Coils	Coil	90	110	-	-
	Vvi13g77	171	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	1	166	-	-
	Vvi13g77	171	Pfam	Lateral organ boundaries (LOB) domain	11	108	IPR004883	-
	Vvi13g77	171	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 21	1	166	-	-

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	13915	PF03195	LOB	2.10E-39	No_clan	Vvi	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g77	-		-	vvi:100243201	348.591