Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g77 | ATGAAGGGTCATGAGCCCCGTTCAAGTTCCTCCTGTGCAGCTTGCAAGTTCTTGAAAAGGAGATGCACTCCCAATTGTATATTCGCACCTTACTTCCGGTCCGATGAGCCCAAGAAATTCGCCAAAGTTCACAAGGTGTTTGGTGCCAGCAATGTGAGCAAGATCCTGGTTGAAGTCCCTGAGGAGCAACGTGAGGACACTGTCAATTCTCTTGCCTATGAGGCTGAGGCCAGGCTTAGAGACCCTGTATATGGTTGCATTGGCGCCATAGCTTTGCTCCAAAGAAAGATGGTTGAGCTCCAACATGATCTCGCCATTGCCAGAGCCCGTCTCGCCCGCTATACCATGCCCGCTTCCTCCACCTCTTCCATCTTCCATGGCAGCCTGGCCATGGCCGGTTTCCAAGACTTTCCGGGCTGCAGCGGCATATTTGACGGTTTCAGCCACCTGAATTCCATGGAGTTGAATCAGCCTGTGGCCATCAATGATTTCAGCCAACCCCCATTTCAGTTGTGA | 516 | 51.94 | MKGHEPRSSSSCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIARARLARYTMPASSTSSIFHGSLAMAGFQDFPGCSGIFDGFSHLNSMELNQPVAINDFSQPPFQL* | 172 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 817193 | 817709 | - | Vvi13g77 | Vvi13g77 | 773863 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g77 | 171 | ProSiteProfiles | LOB domain profile. | 10 | 111 | IPR004883 | - | |
Vvi13g77 | 171 | Coils | Coil | 90 | 110 | - | - | |
Vvi13g77 | 171 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 166 | - | - | |
Vvi13g77 | 171 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 108 | IPR004883 | - | |
Vvi13g77 | 171 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 21 | 1 | 166 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13915 | PF03195 | LOB | 2.10E-39 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g77 | - | - | vvi:100243201 | 348.591 |