Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g792 ATGGTTAAGAAACTTAACCACAACGTCAGTGTGCGGGATCGTCGGAAGAAGATCAACAGCTTGTACTCCTCTCTGCGTTCACTACTTCCATCAGCTGATCAAGTGAAGAAATTAAGCATTCCTTCGACAGTTTCATGTGTGCTAAAATACATACCAGAGCTGCAACGGCAAGTGGAGAGACTGATCCAAAAGAAAGAAGAGTTTTTATCAAAGATTTCTAGGGAAGGAGATCTAATTCACCTAGAAAATCAAAGAAATGGCACACTTGGAAGCTCTTTATCTGCTGTTTCAGCAAGAAGGCTTAGTGACAGGGAAATTGTGGTTCAGATATCCACATTTAAGGTCCATGAGAGTCCACTTTCTGAGGTTTTGTTAAATTTGGAGGAGGATGGGCTTCTTGTAATCAATGCATCATCTTTTGAGTCCTTTGGAGGGAGGGTCTTCTACAACTTACATCTTCAGGTACTTTTCCTTTCCATATTTTTTCTTATTAGTTTTTCTTTCTCACCCCTTAATTTTTATAGTTTTATAATTTAG 537 38.73 MVKKLNHNVSVRDRRKKINSLYSSLRSLLPSADQVKKLSIPSTVSCVLKYIPELQRQVERLIQKKEEFLSKISREGDLIHLENQRNGTLGSSLSAVSARRLSDREIVVQISTFKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQVLFLSIFFLISFSFSPLNFYSFII* 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14129018 14129868 - Vvi13g792 Vvi13g792 774578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g792 178 Coils Coil 51 71 - -
Vvi13g792 178 SMART finulus 8 60 IPR011598 GO:0046983
Vvi13g792 178 Gene3D - 1 85 IPR036638 GO:0046983
Vvi13g792 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 54 IPR011598 GO:0046983
Vvi13g792 178 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 154 IPR015660 GO:0003700|GO:0006357
Vvi13g792 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 71 IPR036638 GO:0046983
Vvi13g792 178 Pfam Helix-loop-helix DNA-binding domain 3 55 IPR011598 GO:0046983
Vvi13g792 178 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 154 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13917 PF00010 HLH 3.50E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g792 - - vvi:100252974 273.092