Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g792 | ATGGTTAAGAAACTTAACCACAACGTCAGTGTGCGGGATCGTCGGAAGAAGATCAACAGCTTGTACTCCTCTCTGCGTTCACTACTTCCATCAGCTGATCAAGTGAAGAAATTAAGCATTCCTTCGACAGTTTCATGTGTGCTAAAATACATACCAGAGCTGCAACGGCAAGTGGAGAGACTGATCCAAAAGAAAGAAGAGTTTTTATCAAAGATTTCTAGGGAAGGAGATCTAATTCACCTAGAAAATCAAAGAAATGGCACACTTGGAAGCTCTTTATCTGCTGTTTCAGCAAGAAGGCTTAGTGACAGGGAAATTGTGGTTCAGATATCCACATTTAAGGTCCATGAGAGTCCACTTTCTGAGGTTTTGTTAAATTTGGAGGAGGATGGGCTTCTTGTAATCAATGCATCATCTTTTGAGTCCTTTGGAGGGAGGGTCTTCTACAACTTACATCTTCAGGTACTTTTCCTTTCCATATTTTTTCTTATTAGTTTTTCTTTCTCACCCCTTAATTTTTATAGTTTTATAATTTAG | 537 | 38.73 | MVKKLNHNVSVRDRRKKINSLYSSLRSLLPSADQVKKLSIPSTVSCVLKYIPELQRQVERLIQKKEEFLSKISREGDLIHLENQRNGTLGSSLSAVSARRLSDREIVVQISTFKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQVLFLSIFFLISFSFSPLNFYSFII* | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 14129018 | 14129868 | - | Vvi13g792 | Vvi13g792 | 774578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g792 | 178 | Coils | Coil | 51 | 71 | - | - | |
Vvi13g792 | 178 | SMART | finulus | 8 | 60 | IPR011598 | GO:0046983 | |
Vvi13g792 | 178 | Gene3D | - | 1 | 85 | IPR036638 | GO:0046983 | |
Vvi13g792 | 178 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 2 | 54 | IPR011598 | GO:0046983 | |
Vvi13g792 | 178 | PANTHER | ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED | 1 | 154 | IPR015660 | GO:0003700|GO:0006357 | |
Vvi13g792 | 178 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 3 | 71 | IPR036638 | GO:0046983 | |
Vvi13g792 | 178 | Pfam | Helix-loop-helix DNA-binding domain | 3 | 55 | IPR011598 | GO:0046983 | |
Vvi13g792 | 178 | PANTHER | TRANSCRIPTION FACTOR ORG2-RELATED | 1 | 154 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13917 | PF00010 | HLH | 3.50E-10 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g792 | - | - | vvi:100252974 | 273.092 |