Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g824 ATGTATAGTTTAACACTTGATGAGGTTCAAAATCAGTTAGGAGACTTGGGGAAACCGCTGACTAGTATGAACCTTGATGAGCTTCTCAAGAATGTGTGGACGCCTAGCCTGTCATTGACAGGTGCTCTTAGCAAGAAGACAGTTGATGAGGTCTGGCGAGATATACAAGGGCATGGCAAGAACAGTGAAGAGAAGAAATCTCGGGAGAGGCAGCCTACTTTGGGGGAGATGACATTGGAGGATTTCCTGGTAAAGGCGGGAGTTGTCGCTGAACCATCAGATAAAAAGATTGCTGGTACTCCGCTACCCATGGGACCTAGCTCTGTCATGGATGTGACATATCCTGACAACCAAGTGGCCTTATCTTCTCCATTGATGGGAGCTTTATCAGATACACAGGCACCTGGGAGGAAAAGAGTTTCCCAAGAGGATATGATTGAGAAAACTGTTGAGAGGAGACAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCAAGGGCCAGGAAGCAGGCTTACACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAAGAGGAAAATGAAAGGCTAAGGAAACGAAAGGAGCTGGAGAAGATGCTGCCAAGTGCACCACCCCCGGAACCCAAATACCAGCTTCGCAGAACGAGTTCAGCCCCATTCTGA 669 47.68 MYSLTLDEVQNQLGDLGKPLTSMNLDELLKNVWTPSLSLTGALSKKTVDEVWRDIQGHGKNSEEKKSRERQPTLGEMTLEDFLVKAGVVAEPSDKKIAGTPLPMGPSSVMDVTYPDNQVALSSPLMGALSDTQAPGRKRVSQEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPSAPPPEPKYQLRRTSSAPF* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15048792 15073575 + Vvi13g824 Vvi13g824 774610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g824 222 PANTHER BZIP TRANSCRIPTION FACTOR 1 220 - -
Vvi13g824 222 Coils Coil 168 202 - -
Vvi13g824 222 MobiDBLite consensus disorder prediction 152 222 - -
Vvi13g824 222 Gene3D - 150 203 - -
Vvi13g824 222 CDD bZIP_plant_BZIP46 152 206 - -
Vvi13g824 222 SMART brlzneu 148 216 IPR004827 GO:0003700|GO:0006355
Vvi13g824 222 Pfam bZIP transcription factor 152 200 IPR004827 GO:0003700|GO:0006355
Vvi13g824 222 SUPERFAMILY Leucine zipper domain 152 197 IPR046347 GO:0003700|GO:0006355
Vvi13g824 222 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 150 195 IPR004827 GO:0003700|GO:0006355
Vvi13g824 222 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 155 170 IPR004827 GO:0003700|GO:0006355
Vvi13g824 222 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 220 IPR043452 GO:0003700|GO:0045893
Vvi13g824 222 PRINTS cAMP response element binding (CREB) protein signature 147 163 - -
Vvi13g824 222 PRINTS cAMP response element binding (CREB) protein signature 165 185 - -
Vvi13g824 222 PRINTS cAMP response element binding (CREB) protein signature 185 202 - -
Vvi13g824 222 MobiDBLite consensus disorder prediction 152 202 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13919 PF00170 bZIP_1 1.50E-13 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g824 K14432 - vvi:100266389 381.719