Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g843 ATGGATGGAGGGTCAGGCCATGGCTTTGTGCCTCCTTCGGCTTCTTTTGATAAATCTCGAGTTTTGGATATCAAGCCTTTGCGGAGTTTGGTTCCGGTGTTCCCTAATCCGCCCCAAGCGCCCCCGTTTGTGTGTTCACCGCCCTTTGGGCCGTTCCCACCTGGGTTTACTCCATTTTATCCATTTAGCGTGGCGCAAGGGCCTCAGAGTTCACCTGAGTTGAACCAACACAAAACCCCAACTGGGGCTACCAATCATGAAACCCCAATATCAGCTTCTGCTAATTTGTTTAGGACTCCGCCCCATTTTCCTGGGGCTAAGAAAAGCAAAGATGTGGATATTTCTTTAACAGTTGATAATGAGAAAGGATCAAGTAAGAATTTTGTTATGAGATTTGACTCACTTCAATTGGATGATGGTAACAGGGAAATGGTGAATTATGTACTTATGACATTTGATGCACTTCGAAGAAGACTTAGTCAAATTGAAGAGGCTAAGGAATCACCTGGTGGAGGTATTAAACGTGCAGATTTAAAAGCTGCCAATATTTTGATGAGCAAAGGGGTTCGGACAAACATGAGGAAGAGAATTGGAGTTACTCCTGGTGTTGAGGTTGGTGACATTTTCTTTTTCCGGATGGAGATGTGTTTGGCTGGATTACATGCTCAATCTATGGCTGGGATTGACTACATGTTTGTCAAGGGTGATGATGCCGATGTTTTGATCTATAGTGGCCAGGGTGGTAATGTAAACAGGAAAGATAAGCAAGTGGCTGATCAGAAGCTAGAAAGGGGCAATCTTGCTTTGGATAGAAGCTTTCACCGAGCCAATGAAGTAAGAGTTATCCGAGGGGTGAAAGATGTAGTTAATCCATTGTCAAAGGTCTATGTCTATGATGGTCTTTATACAATCCAGGAGTCATGGACAGAGAAAGGGAAGTCTGGTTGCAATATGTTCAAATATAAATTGGTCAGAATACCTGGGCAGCCTGGTGCTTTTGCTCATTGGAAATCAATTCAGAAATGGAAGGAAGAACGCATGCCTCCCTGGTGA 1053 43.87 MDGGSGHGFVPPSASFDKSRVLDIKPLRSLVPVFPNPPQAPPFVCSPPFGPFPPGFTPFYPFSVAQGPQSSPELNQHKTPTGATNHETPISASANLFRTPPHFPGAKKSKDVDISLTVDNEKGSSKNFVMRFDSLQLDDGNREMVNYVLMTFDALRRRLSQIEEAKESPGGGIKRADLKAANILMSKGVRTNMRKRIGVTPGVEVGDIFFFRMEMCLAGLHAQSMAGIDYMFVKGDDADVLIYSGQGGNVNRKDKQVADQKLERGNLALDRSFHRANEVRVIRGVKDVVNPLSKVYVYDGLYTIQESWTEKGKSGCNMFKYKLVRIPGQPGAFAHWKSIQKWKEERMPPW* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15529973 15531978 - Vvi13g843 Vvi13g843 774629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g843 350 SMART G9a_1 193 329 IPR003105 -
Vvi13g843 350 Pfam SAD/SRA domain 197 329 IPR003105 -
Vvi13g843 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 235 345 - -
Vvi13g843 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 236 - -
Vvi13g843 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 236 - -
Vvi13g843 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 235 345 - -
Vvi13g843 350 ProSiteProfiles YDG domain profile. 198 325 IPR003105 -
Vvi13g843 350 Gene3D - 179 345 IPR036987 -
Vvi13g843 350 SUPERFAMILY PUA domain-like 179 345 IPR015947 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g843 K24405 SUVH1; [histone H3]-lysine9 N-dimethyltransferase [EC:2.1.1.368] - vvi:100262508 627.476
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g843 . 17 343 Su(var)3-9 homologs AT5G04940 51.6 9.5e-94 341.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1