Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g843 ATGGATGGAGGGTCAGGCCATGGCTTTGTGCCTCCTTCGGCTTCTTTTGATAAATCTCGAGTTTTGGATATCAAGCCTTTGCGGAGTTTGGTTCCGGTGTTCCCTAATCCGCCCCAAGCGCCCCCGTTTGTGTGTTCACCGCCCTTTGGGCCGTTCCCACCTGGGTTTACTCCATTTTATCCATTTAGCGTGGCGCAAGGGCCTCAGAGTTCACCTGAGTTGAACCAACACAAAACCCCAACTGGGGCTACCAATCATGAAACCCCAATATCAGCTTCTGCTAATTTGTTTAGGACTCCGCCCCATTTTCCTGGGGCTAAGAAAAGCAAAGATGTGGATATTTCTTTAACAGTTGATAATGAGAAAGGATCAAGTAAGAATTTTGTTATGAGATTTGACTCACTTCAATTGGATGATGGTAACAGGGAAATGGTGAATTATGTACTTATGACATTTGATGCACTTCGAAGAAGACTTAGTCAAATTGAAGAGGCTAAGGAATCACCTGGTGGAGGTATTAAACGTGCAGATTTAAAAGCTGCCAATATTTTGATGAGCAAAGGGGTTCGGACAAACATGAGGAAGAGAATTGGAGTTACTCCTGGTGTTGAGGTTGGTGACATTTTCTTTTTCCGGATGGAGATGTGTTTGGCTGGATTACATGCTCAATCTATGGCTGGGATTGACTACATGTTTGTCAAGGGTGATGATGCCGATGTTTTGATCTATAGTGGCCAGGGTGGTAATGTAAACAGGAAAGATAAGCAAGTGGCTGATCAGAAGCTAGAAAGGGGCAATCTTGCTTTGGATAGAAGCTTTCACCGAGCCAATGAAGTAAGAGTTATCCGAGGGGTGAAAGATGTAGTTAATCCATTGTCAAAGGTCTATGTCTATGATGGTCTTTATACAATCCAGGAGTCATGGACAGAGAAAGGGAAGTCTGGTTGCAATATGTTCAAATATAAATTGGTCAGAATACCTGGGCAGCCTGGTGCTTTTGCTCATTGGAAATCAATTCAGAAATGGAAGGAAGAACGCATGCCTCCCTGGTGA 1053 43.87 MDGGSGHGFVPPSASFDKSRVLDIKPLRSLVPVFPNPPQAPPFVCSPPFGPFPPGFTPFYPFSVAQGPQSSPELNQHKTPTGATNHETPISASANLFRTPPHFPGAKKSKDVDISLTVDNEKGSSKNFVMRFDSLQLDDGNREMVNYVLMTFDALRRRLSQIEEAKESPGGGIKRADLKAANILMSKGVRTNMRKRIGVTPGVEVGDIFFFRMEMCLAGLHAQSMAGIDYMFVKGDDADVLIYSGQGGNVNRKDKQVADQKLERGNLALDRSFHRANEVRVIRGVKDVVNPLSKVYVYDGLYTIQESWTEKGKSGCNMFKYKLVRIPGQPGAFAHWKSIQKWKEERMPPW* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15529973 15531978 - Vvi13g843 Vvi13g843 774629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g843 350 SMART G9a_1 193 329 IPR003105 -
Vvi13g843 350 Pfam SAD/SRA domain 197 329 IPR003105 -
Vvi13g843 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 235 345 - -
Vvi13g843 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 236 - -
Vvi13g843 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 236 - -
Vvi13g843 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 235 345 - -
Vvi13g843 350 ProSiteProfiles YDG domain profile. 198 325 IPR003105 -
Vvi13g843 350 Gene3D - 179 345 IPR036987 -
Vvi13g843 350 SUPERFAMILY PUA domain-like 179 345 IPR015947 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g843 K24405 - vvi:100262508 627.476