Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g851 ATGCAACTCTATCTCTTTCTCTTCATCTTGTTCTTCACTTTCCTTTCTTTCTCACCGGCTCTCCTCATTTCGGGCCAAGCTCCGCCGCTCACCCCTTCCGCTGCATGCAAAGCCACACTCTATCCCAAGCTCTGTCGATCCATTCTCTCTACTTTCCGGTCATCGCCGGTCCGTCCTGACGCCTACGGTCAGTTCTCTGTGAAGCAGTGCCTGAAACAAGCTAGGAGAATGTCGGAGCTCATCGGCCACTACCTGACCCATAATCAGCGGTGGCCAATGAGCCACGCGGAGGCCGGAGCTCTGGACGACTGCCGGCAGCTGTCGGAGCTGAATGTGGACTATTTGCAGACGATTTCTGGGGAGTTGAAGTCAGCCGAGCTGATGACAGATGAGCTGGTGGAGCGCGTCAGAACTCTGCTTAGCGGGATCGTCACGAATCAGCAGACCTGTTACGACGGGCTCGTGGATTCTAGGAACTCGATGGTGGCTGCATTGTTAGCGCCGCTGTCCAATGCTAATCAGTTGTACAGTGTCTCACTGGGGTTGGTGAGTCGAGCACTAAGCCAGACTCGGAAGCGGCGCAAGAGACGTGGACTGACTGAGAACCGGTTCCTCAAGGAGTTGGACCGGGTTCGCGAACCGACTTCCAAGATCATCGAGGTTCTGAAGAAAGGGTCTTTGAATACATCAAGGGGGTCGTCGAGAGGAGGAAGGATTCTTGCTGAATTGGTGGATGGAGGGGTTCTGGTTAGCAATACTGTGACTGTGTCACCAAATGGTACCGACAACTTCACTACCATTGCAGATGCCATCTCATTTGCTCCCAACAGTTCCAATATTGAGGACGGCTACTTCGTAATCTATGTGAAAGAAGGATACTATGAGGAGTATCCCATGGTTCCCAAATATAAGAAGGGTATAATGCTGCTAGGAGACGGGATTAATCGCACTGTGATCACAGGAAACAGAAGTGTGGTTGATGGCTGGACCACCTTCAATTCTGCCACATTCGCTGTATCTGGAGAGAGATTTGTAGCCATAGACATAACATTCAGGAACACAGCCGGTCCAGAGAAGCACCAAGCGGTAGCCGTGAGGAACAATGCTGATCTCTCCACCTTCTACCGCTGCAGCTTTGAAGGATATCAAGACACACTCTATGCACATTCTCTAAGGCAATTCTACAGGGACTGCATCGTATATGGAACTGTAGATTTCATCTTTGGGAACTCTGCTTGCATCTTTCAGAACTGCAACTTGTATGCTCGAAAGCCCATGCCCAATCAGAAAAACGCCTTCACAGCCCAGGGGCGGATGGATCCAAATCAGAACACTGGCATCTCCATTCACAACTGCACCATTGAAGCTGCCCCTGACTTAGCCATGGACTTGAACTCCACCTTGAATTATCTGGGTCGTCCATGGAAGCAGTACTCCAGGACTGTGTACATGCAGTCCTATATTGGCAGCCTCATCGATCCAGTGGGATGGCTGGAATGGAATGGAACAGTGGGATTGGACACCCTTTACTATGGAGAGTTCGAGAATTATGGGCCAGGTGCAAATACTAGTATGAGAGTGCAATGGCCTGGTTATACTCTGATGAATGCTTCACAAGCTGTGAATTTTACTGTATATAATTTCACAATGGGAGATACTTGGTTGACTAACCTTGATATACCCTTCTATGGGGGATTACTATAG 1704 49.71 MQLYLFLFILFFTFLSFSPALLISGQAPPLTPSAACKATLYPKLCRSILSTFRSSPVRPDAYGQFSVKQCLKQARRMSELIGHYLTHNQRWPMSHAEAGALDDCRQLSELNVDYLQTISGELKSAELMTDELVERVRTLLSGIVTNQQTCYDGLVDSRNSMVAALLAPLSNANQLYSVSLGLVSRALSQTRKRRKRRGLTENRFLKELDRVREPTSKIIEVLKKGSLNTSRGSSRGGRILAELVDGGVLVSNTVTVSPNGTDNFTTIADAISFAPNSSNIEDGYFVIYVKEGYYEEYPMVPKYKKGIMLLGDGINRTVITGNRSVVDGWTTFNSATFAVSGERFVAIDITFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYAHSLRQFYRDCIVYGTVDFIFGNSACIFQNCNLYARKPMPNQKNAFTAQGRMDPNQNTGISIHNCTIEAAPDLAMDLNSTLNYLGRPWKQYSRTVYMQSYIGSLIDPVGWLEWNGTVGLDTLYYGEFENYGPGANTSMRVQWPGYTLMNASQAVNFTVYNFTMGDTWLTNLDIPFYGGLL* 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15881965 15885323 + Vvi13g851 Vvi13g851 774637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g851 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 186 IPR035513 -
Vvi13g851 567 Pfam Plant invertase/pectin methylesterase inhibitor 33 181 IPR006501 GO:0004857
Vvi13g851 567 Pfam Pectinesterase 254 552 IPR000070 GO:0030599|GO:0042545
Vvi13g851 567 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Vvi13g851 567 SUPERFAMILY Pectin lyase-like 249 564 IPR011050 -
Vvi13g851 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 178 IPR006501 GO:0004857
Vvi13g851 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 185 IPR035513 -
Vvi13g851 567 SMART PMEI_2 27 182 IPR006501 GO:0004857
Vvi13g851 567 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 9 566 - -
Vvi13g851 567 Gene3D - 248 566 IPR012334 -
Vvi13g851 567 CDD PMEI-like_3 34 185 - -
Vvi13g851 567 PANTHER PECTINESTERASE 9 566 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g851 K01051 - vvi:100262623 1133.63