Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g852 ATGTCTTCCTTCAAGGCCTACGGGAAAGTCAATGAAGCCGAACAAGAGAGGCTCTTGGCTCGTCGGAAAACCAGAAGAAGAATTACCATCATAAGCTTATCCTCAATCATCCTCGTTGCTGTTATAGTGGCTGCTGTTGTTGGCACTACTACCAATTCAGGGGGGAAGTCCAAGAATGCTGGAAATTCGGTTTCTACTTCCATCAAAGCGGTATGTGATGTTACCCTCTATCCAGACTCATGTTATAATAGTCTTGCACCTATGGTTAAGTCAAGCCAGCTTAAACCTGAAGATCTCTTCAACATGTCCATGGAAGTGGCCTTGAATGAGCTGCACAGAACTTTTCAGCGCTTCTCCGAGCATGAAGGCTTCAAGGGCATCACTGACAAAATGTTGGCTGGGGCTCTCGACGATTGTTATGAGCTTCTTGACCTAGCTATTGATAATCTCAACAGCTCACTGTCCTCTAGCTTGGACAATTTCGATGATCTCAAGACATGGTTAAGTGCTGCAGGTACTTACCAAGAGACTTGCATAAATGGCTTTGAGTCTGGAAATTTAAGGAGTAGTGTTCTTGAGTTCCTGAAGAACTCCACCGAGTTCTCTAGCAATAGCCTTGCCATCATCACCGAGATATCGAAGCTCGCAGGCTCCATCAGTTCCCGGCGATTAATGGGTTTGCCTGAGGATAAAGTTCCAAAATGGTTATCTGCAAAAGATCGGAAGCTACTTCAAAGTTCAAGTACTTTGAAAAAGAAGGCTGATGCTGTAGTCGCAACAGATGGCTCAGGGAAGTACAAGACAATTAGTGAAGCCCTGAAGGCTGTCCCTGATAAGAGCAAGAAGAGCTTTGTAATCTATGTCAAGAAAGGGGTTTACAATGAAAATGTAAGGGTCGAGAAGTCGAAATGGAATGTTTTGATGATAGGTGATGGAATGAATAAAACGGTGGTATCAGGTAAACTGAACTTTGTTGATGGAACTCCAACATTCTCAACAGCAACATTTGCCGTATTTGGAAAAGGATTTGTTGCAAGAGAAATGGGATTTCGAAACACTGCTGGTGCAATCAAGCACCAGGCCGTAGCGCTGATGTCAAGTGCCGACCAGACCGTGTTTTACCGCTGTCTCATAGATGCCTTTCAGGACTCTCTCTACGCCCATTCCCACCGCCAATTCTACCGTGAGTGTGACATCTATGGAACAGTAGATTTCATCTTTGGAAATTCAGCAGTTGTGTTCCAAAACTGCAACATACTGCCCAAGCAACCCATGCCTGGCCAGCAGAACACTATCACAGCGCAAGGGAAGAATGACCCTAACCAAAATACAGGGATTGCTATACAGAATTGCACCATTCTACCGTCAGCAGACTTGAGCTCTGTCAAGACTTACCTTGGACGGCCTTGGAAGAATTACTCAACAACTGTATACATGCATTCAATGATGGGGAGCTTGATTGACCCAGCGGGCTGGTTACCATGGACAGGCACAACAGCCCCAAACACCATTTTTTACTCTGAATTTCAGAATTTCGGACCTGGTTCCTCCACGAAGAATAGAGTTAAGTGGAAGGGATTGAGAAATATCACCCAGAAAGAAGCTAGTAAATTTACAGTCAAGTCATTCATTGATGGGAGCAAGTGGATCTCGGATGCTGGTGTTAGCTTCAAACCCGGGCTGTGA 1686 44.9 MSSFKAYGKVNEAEQERLLARRKTRRRITIISLSSIILVAVIVAAVVGTTTNSGGKSKNAGNSVSTSIKAVCDVTLYPDSCYNSLAPMVKSSQLKPEDLFNMSMEVALNELHRTFQRFSEHEGFKGITDKMLAGALDDCYELLDLAIDNLNSSLSSSLDNFDDLKTWLSAAGTYQETCINGFESGNLRSSVLEFLKNSTEFSSNSLAIITEISKLAGSISSRRLMGLPEDKVPKWLSAKDRKLLQSSSTLKKKADAVVATDGSGKYKTISEALKAVPDKSKKSFVIYVKKGVYNENVRVEKSKWNVLMIGDGMNKTVVSGKLNFVDGTPTFSTATFAVFGKGFVAREMGFRNTAGAIKHQAVALMSSADQTVFYRCLIDAFQDSLYAHSHRQFYRECDIYGTVDFIFGNSAVVFQNCNILPKQPMPGQQNTITAQGKNDPNQNTGIAIQNCTILPSADLSSVKTYLGRPWKNYSTTVYMHSMMGSLIDPAGWLPWTGTTAPNTIFYSEFQNFGPGSSTKNRVKWKGLRNITQKEASKFTVKSFIDGSKWISDAGVSFKPGL* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15912640 15914421 - Vvi13g852 Vvi13g852 774638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g852 561 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Vvi13g852 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 213 IPR035513 -
Vvi13g852 561 Pfam Plant invertase/pectin methylesterase inhibitor 67 208 IPR006501 GO:0004857
Vvi13g852 561 PANTHER PECTINESTERASE 19 557 - -
Vvi13g852 561 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 24-RELATED 19 557 - -
Vvi13g852 561 SMART PMEI_2 63 208 IPR006501 GO:0004857
Vvi13g852 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 212 IPR035513 -
Vvi13g852 561 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Vvi13g852 561 Gene3D - 249 561 IPR012334 -
Vvi13g852 561 Pfam Pectinesterase 255 546 IPR000070 GO:0030599|GO:0042545
Vvi13g852 561 SUPERFAMILY Pectin lyase-like 253 559 IPR011050 -
Vvi13g852 561 CDD PMEI-like_3 70 214 - -
Vvi13g852 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 34 212 IPR006501 GO:0004857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g852 - - vvi:100267782 1032.32