Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g86 ATGACATCCTTCTACACATATTTCTTCTCCCTACTAAAGATGGAAGAGGAAAAAGAAAAAATTAACTACCTCCAACAAACCACCCTACATGCTAAAAGTCTCCAACACTTCAAAAATAAAAATCTGAAGTCCCAACCCAAACACCCTTTCCCCCCTTCCAATATCTGGTTCCCCTCTTCTTCTTCATTCCTCTTCCTTTTTCTATTTTCCCCACCAAAATCCATTTCTACCGCTCCACCATTTCTCTCTCTTTTTTTTTTGTTCTCCATTTTTCTTTGTTTCTCTCTACCCTACAACCCACAACACCCAAACCCATTGCACGGTTTCAATATATACTTGGACTTTAGAATAGGTCCATCCCAATTCCCAACTCCCAACTCCCAACCATTTAATTTCTGTGAAGGTTGGTCCACAACTGAAGCATCCGTTGTGGAAGAGCCCAATACACCTAAAGTACCTCCCACGGAAGAGCCCAATGCTGCCACTCAGCTAGTCACCAAGCATTCCAAGGCCCAGTCCAACTCAGGCCCACGCAGGCCCAGAAAACCACCAACTTGGATGAACGACTACGTCGTATCTGAACTTTCTCTCTTTTCCTTATTCTTCCTTTTTCTGCTCAACCTTTTCTCTGTTTTCTCCCTTCTTCGTTCTGGAGATATTGGAGCTGACACTCGCTCGAAGAGTGCCCTTGTGCTAACCGGTCATTTTGCAGGAAGAACGTATCAATTGGTGCTTTCATCGACTCCTTTGATGGCGGACTTGGATGTGCTTTTAGCGGTTAAGGCTTTGCAGGATCAATTTGAAGCTCAATTTGAGAGCCAAACGATGTCGTTTCATCAAATACTCCAACAATATATGTCTACTGTGGATTCGCGACTGGAGGAGTTCCGTTCTCAGTTTCATGGATCGTCGGGATCACGACGTTCTGATTATGGCTTCATCTTCAATGGCTTCAAAGCTTCTGCATCCAACTTAAGCCTTGGTGGGGCATCCCTCACCACGCCAAATGGGGCTCTCAGGCTTACAAACTCATCACCCAACCTCACTGGCCATGCCTTCTACAACACCCCATTTCACTTTCTCAACAAGAACAGCCATGATTCCCAACACCCCACCACAGCTTCCTCCTTTGCCACAACCTTCATCTTTGCCATTGTCCCCAGCTATGTTGGTGGGTCTGGTGGGCATGGTTTTGTCTTCACCGTTTCTCCCTCCAAGAACCTTTCAGACGCTTGGATTGAGTATGATGGAGCTCAAAAAATCGTCAATGTCACCATTTCCCCTGCTTCTCTTCCTAAACCAAGCAAACCCCTCTTGTCCCTAGCCATGGACTTATCCCCTATCTTTAAAGAGTCCATGTATGTTGGCTTCTCAGCTGCCACTGGGAAGCATCCTAACTCTCATTACATTCTGGGGTGGAGTTTGAAGATGGGTCGTACAGAAGAAGACCCTCTTGATCTCTCTAAAATCCCTTCTCCCCCAAGAAATGGAACCCCATCTCCAGGCCTTGGGAGGAGAAGAGGGATTGAGATTGGAGCAGCGTCAACAATGGTGACCCTTGCGTTACTTCTGTGTGGAATCACTATTTCTGTGTATATGCTAAGAAGGGCAAGGCTAGCTGAGGTCCTGGAAGATTGGGAATTGGACTTCCCCCATAGGTTTAGATACAAAGACCTTTATATTGCCACAAAGGGCTTCAAGGAGAGCCAGATTCTCGGCAAAGGCGTGTTCGGCGATCTCCTTCTTGTTTATGATTATATGTCCAATGGCAGCCTGGACACCTTCCTGTTTCAAGAAGACAAGAACCTTGATTGGGGACAGAGGTTCAGGATCCTCAAGGAGATTGCTGCAGGCCTCCTATATTTACATGAAGAATGGGAACAGTTTGATGTTGTTAGGGCTTTTAGCATGGGTAGGCTTGATACATATGGCTTATTATATAACAATTTAAGCTTTTAG 1959 45.58 MTSFYTYFFSLLKMEEEKEKINYLQQTTLHAKSLQHFKNKNLKSQPKHPFPPSNIWFPSSSSFLFLFLFSPPKSISTAPPFLSLFFLFSIFLCFSLPYNPQHPNPLHGFNIYLDFRIGPSQFPTPNSQPFNFCEGWSTTEASVVEEPNTPKVPPTEEPNAATQLVTKHSKAQSNSGPRRPRKPPTWMNDYVVSELSLFSLFFLFLLNLFSVFSLLRSGDIGADTRSKSALVLTGHFAGRTYQLVLSSTPLMADLDVLLAVKALQDQFEAQFESQTMSFHQILQQYMSTVDSRLEEFRSQFHGSSGSRRSDYGFIFNGFKASASNLSLGGASLTTPNGALRLTNSSPNLTGHAFYNTPFHFLNKNSHDSQHPTTASSFATTFIFAIVPSYVGGSGGHGFVFTVSPSKNLSDAWIEYDGAQKIVNVTISPASLPKPSKPLLSLAMDLSPIFKESMYVGFSAATGKHPNSHYILGWSLKMGRTEEDPLDLSKIPSPPRNGTPSPGLGRRRGIEIGAASTMVTLALLLCGITISVYMLRRARLAEVLEDWELDFPHRFRYKDLYIATKGFKESQILGKGVFGDLLLVYDYMSNGSLDTFLFQEDKNLDWGQRFRILKEIAAGLLYLHEEWEQFDVVRAFSMGRLDTYGLLYNNLSF* 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 896927 917652 - Vvi13g86 Vvi13g86 773872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g86 652 Gene3D - 309 408 - -
Vvi13g86 652 CDD lectin_legume_LecRK_Arcelin_ConA 313 477 IPR001220 GO:0030246
Vvi13g86 652 MobiDBLite consensus disorder prediction 484 504 - -
Vvi13g86 652 Gene3D Transferase(Phosphotransferase) domain 1 563 629 - -
Vvi13g86 652 ProSiteProfiles Protein kinase domain profile. 503 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g86 652 Gene3D - 409 491 - -
Vvi13g86 652 PANTHER - 319 409 - -
Vvi13g86 652 PANTHER - 578 633 - -
Vvi13g86 652 PANTHER - 410 579 - -
Vvi13g86 652 SUPERFAMILY Protein kinase-like (PK-like) 547 626 IPR011009 -
Vvi13g86 652 Pfam Legume lectin domain 409 484 IPR001220 GO:0030246
Vvi13g86 652 MobiDBLite consensus disorder prediction 164 179 - -
Vvi13g86 652 MobiDBLite consensus disorder prediction 164 184 - -
Vvi13g86 652 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4-LIKE 578 633 - -
Vvi13g86 652 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4-LIKE 319 409 - -
Vvi13g86 652 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4-LIKE 410 579 - -
Vvi13g86 652 SUPERFAMILY Concanavalin A-like lectins/glucanases 310 480 IPR013320 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g302 Vvi13g86 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76181 PF00139 Lectin_legB 7.30E-20 CL0004 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g86 - - vvi:100260386 304.679