Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g860 ATGGTGAAGAGGAGCTCCCCTGGTTCTTCCTCCTCCCCCTCCTCCTCCTCCACCTCCTCCGACGCCGCATCTCGCCCTGCTCCTCCCTCGGGAGGCAAGCCCAAAAGCAGGAAGAAGGAGGCGAAGAAGAATTCAAATGGCAACGGTAGCAACTCGAAAAACAAGAGAACCTCCATTTACAGGGGAGTCACCAAGCACAGATGGACGGGGAGGTTTGAAGCCCATCTGTGGGACAAGAGCTCCTGGAATGATATCTCGAACAAGAGAGGAAGACAAGGTGCATACTATAATGAGGAAGCCGCTGCTCGTACCTACGATCTCGCTGCCCTTAAGTATTGGGGTCCTACTACACCCTTGAATTTTCCGCTTGAGACCTACCAGAAGGATGCGGAAGAAATGGAGAAGATGTCGAAGGAGGAATATTTAGCTCTGCTCCGCCGGCAAAGCAATGGGTTTTCCCGGGGAGTCTCTAAGCACCACCACAATGGGCGGTGGGAGGCGCGGATCGGGCGGGTCCTTGGAAACAAATATCTCTACCTGGGAACATACAGCACACAAGAGGAGGCAGCTGCAGCATATGACATGGCAGCCATAGAATACAGAGGTCTAAATGCAGTTACCAATTTTGATATCAGCAACTATGTCAAACTGGGCCGAGTGGAAGCCCAGGTCCAGGAGCTGGCCCAACAACTCCAGCCCAATACCCCTATTGGGCCACAAAATGAATTGCAAAAGGAGGAAGAAGAGCAGCTTCAGGAGCCAGTGCTTTCATCATCACAGCACCTTCCTTCCATGGACTCATCTGCAATGGAGATAATGGATCCGGCTGACGACCCTGACCTCCCATGGAACTTCTGTGCCTACAGCACCCTCCTAGTCCCGGACGTGCCCCTCGGAAAGGGTGGGGAGTTGTCGGATTTGTTTTATGAGAAGGGGTTTGAGGACAACATTGACTACATGTTTGAAGGGGCTGCAGGCAATGAGGAAGAGAGTAATAGTGCAGAAAATGGTGTAAAGGAGAATGGCTTCATGCATGAATTGGAGGTTGATGGGAAGCTTCAAAATGTAGTTGGCTTTTTCTTTCTTTCCTTTTTTTTTCTTCCAAAAAGGGCAGGCATAAGGAAGAGGGGAGTTGACTCCTGCATGCAGTTGTTTTTGTATTTTGTTTTCCTTTTTTATCCTTTTTTACCTGAAGTGAGCAAGTTTCTGTTCCATTTGAGTCTTGATTAG 1230 49.67 MVKRSSPGSSSSPSSSSTSSDAASRPAPPSGGKPKSRKKEAKKNSNGNGSNSKNKRTSIYRGVTKHRWTGRFEAHLWDKSSWNDISNKRGRQGAYYNEEAAARTYDLAALKYWGPTTPLNFPLETYQKDAEEMEKMSKEEYLALLRRQSNGFSRGVSKHHHNGRWEARIGRVLGNKYLYLGTYSTQEEAAAAYDMAAIEYRGLNAVTNFDISNYVKLGRVEAQVQELAQQLQPNTPIGPQNELQKEEEEQLQEPVLSSSQHLPSMDSSAMEIMDPADDPDLPWNFCAYSTLLVPDVPLGKGGELSDLFYEKGFEDNIDYMFEGAAGNEEESNSAENGVKENGFMHELEVDGKLQNVVGFFFLSFFFLPKRAGIRKRGVDSCMQLFLYFVFLFYPFLPEVSKFLFHLSLD* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 16184785 16187800 - Vvi13g860 Vvi13g860 774646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g860 409 CDD AP2 154 212 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 MobiDBLite consensus disorder prediction 1 62 - -
Vvi13g860 409 SUPERFAMILY DNA-binding domain 58 124 IPR016177 GO:0003677
Vvi13g860 409 MobiDBLite consensus disorder prediction 1 25 - -
Vvi13g860 409 ProSiteProfiles AP2/ERF domain profile. 59 122 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 Pfam AP2 domain 59 114 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 Gene3D AP2/ERF domain 154 212 IPR036955 GO:0003700|GO:0006355
Vvi13g860 409 Gene3D AP2/ERF domain 59 124 IPR036955 GO:0003700|GO:0006355
Vvi13g860 409 SMART rav1_2 59 128 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 CDD AP2 58 122 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 MobiDBLite consensus disorder prediction 230 262 - -
Vvi13g860 409 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Vvi13g860 409 SUPERFAMILY DNA-binding domain 153 212 IPR016177 GO:0003677
Vvi13g860 409 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 6 339 - -
Vvi13g860 409 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 339 - -
Vvi13g860 409 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13920 PF00847 AP2 5.00E-08 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g860 - - vvi:100250488 578.556