Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g922 ATGACATCAACACTACTGCCGACATTCAGAGTTACATGGCCGCTGAAAACTCCTGGGATTGAGTTGTCTGGGTTTGCTGTTGGTCTTGCTGCTGTTGGCCTCGCTGCTGTCTACTTTTTCTATGGAAGAAGGAAGCCCAAAGGCTGCTTAGACCCAGAAAGATTCCAGGACTTCAAACTAGTCCAGAAAACTCGAATCAGCCACAATGTTGGGAGGTTTAGGTTCGCCCTTCCCACGCCTACCTCAGTGTTTGGTCTTCCTGTTGGACAACATATAATTTGCAGGGGAAAAGATGACCAAGGTGCAGAAGTTATCAGGCCATATACCCCAATTACTTTGGATTCAGATGTTGGTTTCTATGAACTAGTTGTAAAGATGTATCCGAAGGGACAGATGTCCCACCATTTCAGAAAGATGCGTGAAGGCGATACCCTGGCTGTAAAGGGACCCCGGGGGCGTTTGATATATAAACCTGGCCAAGCTAAAGCATTTGGGATGCTTGCTGGAGGGACTGGCATTACCCCAATGTTCCAGCTAACAAGAGCCATATTAGAGAATCCAAAAGACAAAACTAATGTGCATCTTATATATGCCAACATCTCATATGATGACATTCTTTTGAAGGATGAATTAGATGGCTTTGCTCGCAAATTCCCTAATCGTTTCAAGGTTTTTTATGTTCTTAGTCAGCCTCCTGAAGCATGGAATGGTGGCATTGGACATATATCCAAAGAAATGATTGAAAAGCACTGCCCAGCCCCAGCACCTGATATTCAGATATTGAGGTGCGGTCCACCGGGCATGAACAAGGCAATGGCTGGTCATCTTGTGGCCCTTGGATACACTCCCCAAATGCAGTTTGAGTTCTGA 870 45.52 MTSTLLPTFRVTWPLKTPGIELSGFAVGLAAVGLAAVYFFYGRRKPKGCLDPERFQDFKLVQKTRISHNVGRFRFALPTPTSVFGLPVGQHIICRGKDDQGAEVIRPYTPITLDSDVGFYELVVKMYPKGQMSHHFRKMREGDTLAVKGPRGRLIYKPGQAKAFGMLAGGTGITPMFQLTRAILENPKDKTNVHLIYANISYDDILLKDELDGFARKFPNRFKVFYVLSQPPEAWNGGIGHISKEMIEKHCPAPAPDIQILRCGPPGMNKAMAGHLVALGYTPQMQFEF* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18236829 18251417 - Vvi13g922 Vvi13g922 774708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g922 289 Gene3D - 148 289 IPR039261 -
Vvi13g922 289 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 165 184 IPR001709 GO:0016491
Vvi13g922 289 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 203 214 IPR001709 GO:0016491
Vvi13g922 289 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 259 267 IPR001709 GO:0016491
Vvi13g922 289 PANTHER NADH-CYTOCHROME B5 REDUCTASE 9 289 IPR001834 GO:0016491
Vvi13g922 289 Pfam Oxidoreductase NAD-binding domain 166 272 IPR001433 GO:0016491
Vvi13g922 289 CDD cyt_b5_reduct_like 58 289 - -
Vvi13g922 289 PRINTS Cytochrome B5 reductase signature 203 214 - -
Vvi13g922 289 PRINTS Cytochrome B5 reductase signature 106 113 - -
Vvi13g922 289 PRINTS Cytochrome B5 reductase signature 165 184 - -
Vvi13g922 289 PRINTS Cytochrome B5 reductase signature 84 95 - -
Vvi13g922 289 PRINTS Cytochrome B5 reductase signature 142 156 - -
Vvi13g922 289 PRINTS Cytochrome B5 reductase signature 259 267 - -
Vvi13g922 289 Gene3D Translation factors 48 147 - -
Vvi13g922 289 Pfam Oxidoreductase FAD-binding domain 58 156 IPR008333 -
Vvi13g922 289 SUPERFAMILY Riboflavin synthase domain-like 46 158 IPR017938 -
Vvi13g922 289 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 53 157 IPR017927 GO:0016491
Vvi13g922 289 PANTHER NADH-CYTOCHROME B5 REDUCTASE 9 289 - -
Vvi13g922 289 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 143 285 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g922 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - vvi:100259177 581.252
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo09g00346 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi16g991 . 1 135 NADPH P450 reductases AT5G53560 80.0 1.2e-59 226.1
Vvi7g751 . 5 132 NADPH P450 reductases AT5G53560 64.8 3.9e-47 184.5
Vvi7g751 . 2 132 NADPH P450 reductases AT5G48810 69.9 2.5e-52 201.8
Vvi16g991 . 1 134 NADPH P450 reductases AT5G48810 60.3 8.5e-45 176.8
Vvi7g751 . 21 134 NADPH P450 reductases AT2G32720 78.9 6.0e-48 187.2
Vvi16g991 . 22 133 NADPH P450 reductases AT2G32720 65.2 3.9e-39 157.9
Vvi1g19 . 1 133 NADPH P450 reductases AT1G26340 70.1 2.1e-48 188.7
Vvi8g84 ECH 2 278 NADPH P450 reductases AT5G17770 81.0 5.0e-129 457.6
Vvi6g897 ECH 8 279 NADPH P450 reductases AT5G17770 77.2 8.2e-124 440.3
Vvi13g922 . 24 290 NADPH P450 reductases AT5G17770 68.5 1.8e-110 396.0
Vvi16g991 . 1 135 NADPH P450 reductases AT5G53560 80.0 1.2e-59 226.1
Vvi7g751 . 5 132 NADPH P450 reductases AT5G53560 64.8 3.9e-47 184.5
Vvi7g751 . 2 132 NADPH P450 reductases AT5G48810 69.9 2.5e-52 201.8
Vvi16g991 . 1 134 NADPH P450 reductases AT5G48810 60.3 8.5e-45 176.8
Vvi7g751 . 21 134 NADPH P450 reductases AT2G32720 78.9 6.0e-48 187.2
Vvi16g991 . 22 133 NADPH P450 reductases AT2G32720 65.2 3.9e-39 157.9
Vvi1g19 . 1 133 NADPH P450 reductases AT1G26340 70.1 2.1e-48 188.7
Vvi8g84 ECH 2 278 NADPH P450 reductases AT5G17770 81.0 5.0e-129 457.6
Vvi6g897 ECH 8 279 NADPH P450 reductases AT5G17770 77.2 8.2e-124 440.3
Vvi13g922 . 24 290 NADPH P450 reductases AT5G17770 68.5 1.8e-110 396.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86