Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g930 ATGAGGAAGAAGCTCGATACCCGTTTCCCGGCTGCTCGGATTAAAAAGATAATGCAAGCTGATGAAGATGTTGGGAAGATTGCCCTGGCAGTGCCTGTTTTAGTTTCTAAAGCATTGGAATTATTTTTGCAAGACCTTTGTGACCGTACCTATGATATAACCCTTCAGAGAGGAGCAAAGACTATGAGTTCATTGCATTTGAAACATTGTGTCCAAAGGCACAATGTATTTGATTTTCTGAGGGACATTGTGAGCAAGGTTCCAGACTATGGTCATGCTGATGCTGCTGGTGATGATCGAACCATGTCAAAAAGAAGGAAAGCTGCAGGGGATGAATTCAATGAAAGCGATGAAGAGACTAAAAGGAGCAGGATGCATGAGATGAGTCCTGTCAGCAGCAGTGGCAGAGGGAGAGGCAGGGGACGTGGAAGAGGCCGTGGTCGGGGCAGTCGAGCAATAGAGAGAGAGCCTGTTCCACATGATGTAGAATCTGACCCCTGCACATCTTTGCCACACAGCAGTAAACATGACCCCAACTTGGGAAGGCCAATACCCAACATTTCTGAGTCAAAGGAATTAGTGAAGGATAATACTGCAGTGAGTGATGGTGCAAATCCGGTGGTTCGAAACTTTGATCTGAATGCTAATGTAGATGAAGATCACCAGCACCAGCACCAGCAGCAGTGGATGTCCGTGACTCATCGGCAGAGACTGCCACTGAGGCTAAACATGAAGAGTATCCTGGCTGGTCACTTTCTGAAATGGACAGAATGGCAATTGATCCAGTCCAGCTTGCACAACTCAATTCTAGGATAG 816 46.57 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKHCVQRHNVFDFLRDIVSKVPDYGHADAAGDDRTMSKRRKAAGDEFNESDEETKRSRMHEMSPVSSSGRGRGRGRGRGRGRGSRAIEREPVPHDVESDPCTSLPHSSKHDPNLGRPIPNISESKELVKDNTAVSDGANPVVRNFDLNANVDEDHQHQHQQQWMSVTHRQRLPLRLNMKSILAGHFLKWTEWQLIQSSLHNSILG* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18534478 18549622 + Vvi13g930 Vvi13g930 774716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g930 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 232 - -
Vvi13g930 271 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Vvi13g930 271 MobiDBLite consensus disorder prediction 90 186 - -
Vvi13g930 271 PANTHER HISTONE SUPERFAMILY PROTEIN 1 232 - -
Vvi13g930 271 MobiDBLite consensus disorder prediction 90 126 - -
Vvi13g930 271 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vvi13g930 271 MobiDBLite consensus disorder prediction 147 162 - -
Vvi13g930 271 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g931 Vvi13g930 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13922 PF00808 CBFD_NFYB_HMF 8.10E-19 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g930 K21752 - vvi:100255768 405.601