Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g930 ATGAGGAAGAAGCTCGATACCCGTTTCCCGGCTGCTCGGATTAAAAAGATAATGCAAGCTGATGAAGATGTTGGGAAGATTGCCCTGGCAGTGCCTGTTTTAGTTTCTAAAGCATTGGAATTATTTTTGCAAGACCTTTGTGACCGTACCTATGATATAACCCTTCAGAGAGGAGCAAAGACTATGAGTTCATTGCATTTGAAACATTGTGTCCAAAGGCACAATGTATTTGATTTTCTGAGGGACATTGTGAGCAAGGTTCCAGACTATGGTCATGCTGATGCTGCTGGTGATGATCGAACCATGTCAAAAAGAAGGAAAGCTGCAGGGGATGAATTCAATGAAAGCGATGAAGAGACTAAAAGGAGCAGGATGCATGAGATGAGTCCTGTCAGCAGCAGTGGCAGAGGGAGAGGCAGGGGACGTGGAAGAGGCCGTGGTCGGGGCAGTCGAGCAATAGAGAGAGAGCCTGTTCCACATGATGTAGAATCTGACCCCTGCACATCTTTGCCACACAGCAGTAAACATGACCCCAACTTGGGAAGGCCAATACCCAACATTTCTGAGTCAAAGGAATTAGTGAAGGATAATACTGCAGTGAGTGATGGTGCAAATCCGGTGGTTCGAAACTTTGATCTGAATGCTAATGTAGATGAAGATCACCAGCACCAGCACCAGCAGCAGTGGATGTCCGTGACTCATCGGCAGAGACTGCCACTGAGGCTAAACATGAAGAGTATCCTGGCTGGTCACTTTCTGAAATGGACAGAATGGCAATTGATCCAGTCCAGCTTGCACAACTCAATTCTAGGATAG 816 46.57 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKHCVQRHNVFDFLRDIVSKVPDYGHADAAGDDRTMSKRRKAAGDEFNESDEETKRSRMHEMSPVSSSGRGRGRGRGRGRGRGSRAIEREPVPHDVESDPCTSLPHSSKHDPNLGRPIPNISESKELVKDNTAVSDGANPVVRNFDLNANVDEDHQHQHQQQWMSVTHRQRLPLRLNMKSILAGHFLKWTEWQLIQSSLHNSILG* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18534478 18549622 + Vvi13g930 Vvi13g930 774716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g930 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 232 - -
Vvi13g930 271 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Vvi13g930 271 MobiDBLite consensus disorder prediction 90 186 - -
Vvi13g930 271 PANTHER HISTONE SUPERFAMILY PROTEIN 1 232 - -
Vvi13g930 271 MobiDBLite consensus disorder prediction 90 126 - -
Vvi13g930 271 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vvi13g930 271 MobiDBLite consensus disorder prediction 147 162 - -
Vvi13g930 271 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g930 K21752 DRAP1, NC2-alpha; Dr1-associated corepressor - vvi:100255768 405.601
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g931 Vvi13g930 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g930 . . . . . . . . . Cmo04g01369 . . . . . . Cpe09g00475 . . . . . . . . . . . . . . . . . . . . Chy10g00706 Cme10g00737 . . . . . . . . . . . . . . . Cpe01g01183 . . . . . . . . . . . . . . . Lsi04g00745 Csa05g02134 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g85 . 1 146 CCAAT-HAP5 Transcription Factor Family AT3G48590 67.2 9.4e-57 217.2
Vvi17g85 . 1 146 CCAAT-HAP5 Transcription Factor Family AT5G63470 60.0 5.9e-49 191.4
Vvi6g931 ECH 1 301 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.1 2.5e-62 236.1
Vvi13g930 ECH 1 136 CCAAT-HAP5 Transcription Factor Family AT3G12480 74.6 5.5e-54 208.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13922 PF00808 CBFD_NFYB_HMF 8.10E-19 CL0012 Vvi TF