Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g938 ATGTCCACCGCCACTCCGCCGGAGTCTGCTGCTGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTTAGCATCCTCGTCCTCATCTCGACGATCATGCTCGCCTCCTATGCCTGCGTCAGAGTCAAAGCTAGCGGCGGCACTCGCGCTGACCACGGCAGACCAGGAACGAATCGCGAGTCCACCGCCGTCGATTTGTCGGAGCTAGCAGCGGTGGTGGTTGTGGCGGGCCTAGATGGCCCGGCAATAGAGTCGTATCCGAAGATGGTACTGGGCCAGAGCCGGCGGCTGCCGAGGCCCAACGACGGCCCGTGCTCCATCTGCCTGTCGGAGTACCGTCCCAACGAGACCGTCCGGTCTATTCCGGAGTGCAACCACTGCTTCCACGCCGATTGCATCGACGAGTGGCTTCGGATGAGCGCCACGTGCCCCATCTGCAGAAGCTCTCCGGCGGTCTCGGCGGCTCCGACGCCGCTCGCCACTCCTCTCTCCGAGGTGGTGCCTCTCGCCTTCCACGCCAGAAGCAATGTAGGGCAAGTAAAGTACAAATTAATGATGATATTAGCTTCCAATTAA 576 61.98 MSTATPPESAAGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGTNRESTAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNETVRSIPECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHARSNVGQVKYKLMMILASN* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18797444 18798193 - Vvi13g938 Vvi13g938 774724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g938 191 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 157 - -
Vvi13g938 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 151 IPR013083 -
Vvi13g938 191 SMART ring_2 105 146 IPR001841 -
Vvi13g938 191 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vvi13g938 191 SUPERFAMILY RING/U-box 99 152 - -
Vvi13g938 191 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 12 157 - -
Vvi13g938 191 CDD RING-H2_PA-TM-RING 105 147 - -
Vvi13g938 191 Pfam Ring finger domain 105 147 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g938 - - vvi:100253964 350.132