Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g977 ATGGAGGACCCAGAAACAGTAGACCGTGAATTTAACGATGAAGAAGAAGATCAGGATGAAGATTGGGGGGACTGGGGAGCAGACGACAATGAAGAAGAGGAGTCGGACCCAGATTTCCTGTGTTTGTTCTGCGATTCTAAGTACAGTTCTTGCGATGCTCTCTTCGAACACTGCTCTTCCATTCACCACTTCGATTTTCTCAGTATTAGGGAAACCCTAAGTTTGGATTTCTATGGGTCATTCAAACTCATCAACTTCGTCAGGTCTCGGGTGGCAGAAAATAGGTGTTGGAGTTGCGGGCTTGTCTGTCAGTCCAACCAAGATCTTCAAACTCATTTACATGAAACAGCCAATTTTGAAGAGATTAAACTGCATTTGGATGATGATAAATATCTAAACCCTTTCATGCAAGAGGATCCCCTTTTGTACAGTTTTAGTCAAGATGAAGAAGGTGAAGATGACGATGCTACTGCACTTGAAAAAGAGGAAATAATGAGGGATCTAAGGGAATTTGGAGAGATTTGCATTGATGATGGGGACATCATAGATGCCCTTGCATCTGATTTTGACACCTTGAATGAAGATAGAAGGGAGGAACATGTTGGTTCATTTAAAAGAAAGCCAAAAGATAAGCATTTGAGAGTTTCTTTTGCAAATGTTGTTTCAAAGGAAATCAAGAATGTGAATGAGAATTATTTTGGGGCATATAGTTCATTTGGCATCCACAGAGAGATGATAAGTGATAAGGTAAGAATGGATGCTTATAGGCAAGCTATCTTGAATAATCCTTCTCTCATGAAAGGTGCAACTGTGTTGGATGTAGGTTGTGGGACTGGCATACTGAGTCTCTTTGCAGCCCAAGCTGGGGCTTCAAGGGTAATCGCAGTAGAAGCCAGTGAAAAGATGGCTTCAGTGGCAACTCAGGTTGCAAAAGACAATGGCCTTTTGTGTAGTGCAAGCCCAAATGCAGGCAATAATCATTATACCGGGGTGATAAAAGTGGTTCAAGGTATGGTTGAAGAGCTTGATAAATCCATTGAATCCCACAGTATTGATGTGTTATTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCGATGCTTAGCTCAGTGCTCTTTGCAAGAGATCACTGGCTGAAGCCTGGAGGTGCCATTCTCCCTGACACAGCAACTATTTTTGTTGCAGGCTTTGGAAGAGGTGGTACCAGTATTCCATTTTGGGAAAACGTTTATGGGTTCAATATGTCTTGTGTTGGCAAGGAACTTGTTGAAGATGCTGCTCAAACTCCTATTGTTGATATAGTGGACAGTCATGATATAGTTACAGATGCTGCTGTTCTCCAGACCTTTGATCTGGTGACCATGAAGCCTGAAGAAATGGATTTCACAGCAAGCATCAGATTGCAACCGAAGTTGGATCATCCAGCTGACACCAACGCCTCCATGGATTTGGAACAGAAACCAACTTGGTGTCATGGAGTTGTCTTATGGTTTGAGACTGGTTTTACCAGTCGGTTCTGCAGAGAAACATCAACCATCCTCTCCACTTCACCATTCACTCCCAAAACACACTGGTCACAAACAATCCTCACCTTCAGAGAACCAATTGCAATGGCAGCTGGAAAACCCAATGCCAAGAAATCAGGGGGAGTTGGCAGTGATGCCTGCCCTGCCTCCAGCGTCCATTTGCGAATCAGCATTATCCGTGCTGCCCAGCATCGCAGTATCGATATCTCCTTGGAGACGACAGGGATTGCCTGTGATGGTCGGAAGCACAGTTGGCCTGTCCAGATCTTTAATCTGAGCTAG 1812 43.76 MEDPETVDREFNDEEEDQDEDWGDWGADDNEEEESDPDFLCLFCDSKYSSCDALFEHCSSIHHFDFLSIRETLSLDFYGSFKLINFVRSRVAENRCWSCGLVCQSNQDLQTHLHETANFEEIKLHLDDDKYLNPFMQEDPLLYSFSQDEEGEDDDATALEKEEIMRDLREFGEICIDDGDIIDALASDFDTLNEDRREEHVGSFKRKPKDKHLRVSFANVVSKEIKNVNENYFGAYSSFGIHREMISDKVRMDAYRQAILNNPSLMKGATVLDVGCGTGILSLFAAQAGASRVIAVEASEKMASVATQVAKDNGLLCSASPNAGNNHYTGVIKVVQGMVEELDKSIESHSIDVLLSEWMGYCLLYESMLSSVLFARDHWLKPGGAILPDTATIFVAGFGRGGTSIPFWENVYGFNMSCVGKELVEDAAQTPIVDIVDSHDIVTDAAVLQTFDLVTMKPEEMDFTASIRLQPKLDHPADTNASMDLEQKPTWCHGVVLWFETGFTSRFCRETSTILSTSPFTPKTHWSQTILTFREPIAMAAGKPNAKKSGGVGSDACPASSVHLRISIIRAAQHRSIDISLETTGIACDGRKHSWPVQIFNLS* 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19770174 19777389 + Vvi13g977 Vvi13g977 774763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g977 603 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 229 582 IPR025799 GO:0016274|GO:0018216
Vvi13g977 603 SUPERFAMILY beta-beta-alpha zinc fingers 17 154 IPR036236 -
Vvi13g977 603 CDD AdoMet_MTases 270 387 - -
Vvi13g977 603 Pfam C2H2 type zinc-finger (2 copies) 41 116 IPR041661 -
Vvi13g977 603 MobiDBLite consensus disorder prediction 1 33 - -
Vvi13g977 603 Pfam Methyltransferase domain 271 384 IPR041698 -
Vvi13g977 603 Gene3D - 391 593 - -
Vvi13g977 603 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 11 602 - -
Vvi13g977 603 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 236 543 IPR029063 -
Vvi13g977 603 Gene3D Vaccinia Virus protein VP39 220 388 IPR029063 -
Vvi13g977 603 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 11 602 IPR025799 GO:0016274|GO:0018216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g977 K11436 - vvi:100253139 1175.23