Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g978 ATGGGGAGTATAGCAGTGAGGGCTGGTGCAGACGATGAAAAGGAAGCAGCCAGCGGGATGCCGAGCTTCGATCCTCAATTACCTGTTTCGAATGCACTTTGTACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGACACTTGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAAGCACTGCATTCAATTCGACAAAACCAAGTGGTCGAGCAGTTACTTCTGATCCCCTCCATAGTGTCACTTTTGATAAGTCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAGAGGTTGCCATTGCAAAAGGGTCAACAATCAAACCTGGTTTCTATATCTAGTGGTAGTGTAGAGAACTGGGGAGAGTCTGCAATGGCAGATGCCAGTCCTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGTTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGATCAAAGGATAAAAATGATCAGAAGACTCTTCGTAGGCTTGCTCAAAATCGTGAAGCTGCACGAAAAAGCCGATTGAGAAAGAAAGCATATGTCCAACAGCTAGAAAGTAGCCGGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAGGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCGACAAATCAACGAACTGAGATCAGCGGTCAATTCTCATGCAAGCGATGCTGAACTTCGTGTTATTGTTGATAATATCATGGCACACTATGATGACATATTCAGGCTGAAGGGCGTTGCAGCCAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCGGAAACTTGCAACAGTCCTCCCAACAGGCAGAGGATGCATTATCACAAGGAATGGAAGCATTGCAGCAGTCCCTGGCTGAGACTCTGTCCAGTGGTTCTCTTGGCTCTTCTGGTTCATCTGGAAATGTGGCAAACTATATGGGTCAAATGGCCATGGCCATGGGAAAGCTGGGGACTCTTGAGGGGTTTATTCGTCAGGCTGACAATCTACGACAACAAACGCTACAACAGATGCACCGCATACTGACAACCCGCCAGTCAGCTCGTGCGCTCCTTGCTATACATGACTACTTCTCCCGACTCCGTGCTCTGAGTTCTCTCTGGCTGGCACGTCCAAGAGAGTGA 1410 47.59 MGSIAVRAGADDEKEAASGMPSFDPQLPVSNALCTEGNSIHSYRVSDFGTLEQSIGFHLEDAVDLSGSTAFNSTKPSGRAVTSDPLHSVTFDKSQNSFDINPSAARVESQRLPLQKGQQSNLVSISSGSVENWGESAMADASPRTDISTDVDTDDKVQRFERGQPASNMASDSSDRSKDKNDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHASDAELRVIVDNIMAHYDDIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19780666 19805748 - Vvi13g978 Vvi13g978 774764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g978 469 Pfam Basic region leucine zipper 181 226 IPR004827 GO:0003700|GO:0006355
Vvi13g978 469 MobiDBLite consensus disorder prediction 1 25 - -
Vvi13g978 469 MobiDBLite consensus disorder prediction 134 186 - -
Vvi13g978 469 ProSiteProfiles DOG1 domain profile. 249 466 IPR025422 GO:0006351|GO:0043565
Vvi13g978 469 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 226 IPR004827 GO:0003700|GO:0006355
Vvi13g978 469 Coils Coil 260 280 - -
Vvi13g978 469 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 63 469 - -
Vvi13g978 469 SMART brlzneu 180 243 IPR004827 GO:0003700|GO:0006355
Vvi13g978 469 MobiDBLite consensus disorder prediction 147 161 - -
Vvi13g978 469 PANTHER TRANSCRIPTION FACTOR TGA9 63 469 - -
Vvi13g978 469 Gene3D - 183 234 - -
Vvi13g978 469 Coils Coil 203 230 - -
Vvi13g978 469 CDD bZIP_HBP1b-like 184 236 - -
Vvi13g978 469 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700|GO:0006355
Vvi13g978 469 SUPERFAMILY Leucine zipper domain 184 227 IPR046347 GO:0003700|GO:0006355
Vvi13g978 469 Pfam Seed dormancy control 266 341 IPR025422 GO:0006351|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13924 PF14144 DOG1 3.30E-33 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g978 K14431 - vvi:100242879 875.544