Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13randomg113 ATGGCAGCGGTTGGGATACAGAAGTTTTGTTTTTTCATTGTATCTAGGAACGATGGGTATATTCAGATTTTAGCTGTATTTGATGACCTGGGTCTGAACGCTTGGGGACTCAAAATGCCCACACGGCAAGACAATACAGATTCCAACAATGGTTCTGGAACAGGGTCTTCCCTACTGGACCTCTTACGTTCAGACATCTATTGGAATTGTCGAAAGGAAGGACAAACATCTTCTGGTCCACGAGGAAGGTTGGAGAATCTTTTGTGTCAATCAGGAAATAACATTTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTGTAAGTCTTGGAGTATTTATTTGTATCAAGTGTTCTGGTGTACATAGAAGCCTCGGAGCACATGTCTCAAAGGTTTTATCAATTAAGCTAGATGAATGGACAGATGAACAGGTTGATACGTTGACGGGTATGGGTGGAAACAGTGAGGCAAACATGAAGTATGAAGCTTCCATTCCGGACTACATCAGAAAACCAAGACCAGATTCCTCTACAGAGGAACGCTCTGATTTCATTAGGAGAAAATATGAGATGCAACAATTTTTCAACTCTGATGAACAGATGTTCTGCCCCTTTCCACCTCAAGAGAAGAAGCACTATGAGAAACAGACAACTACCCATCGTCTCCATGGACTTGGGCTGGCATTTCGCAATAGTTGGAGAAGAAAAGAGCCTGAGCACAAGCCTGTCAAGAAGAGCAGCTCATCGGCAGGCATGATCGAATTTGTTGGATTGATAAAGGTCAATGTAGTCAAAGGCACCAACCTAGCTGTCCGTGATGTAATGACAAGTGATCCATACGTTCTCCTTGCATTGGGACAACAATCGGTGAAGACGCGTGTCATAAAGAACAACCTTAATCCAGTATGGAATGAAAGGTTAATGTTGTCAATTCCAGAACAAATTCCACCATTAAGAGTGTTTGTGTATGACAAGGATACATTCTCAACCGATGATTTCATGGGGGAGGCCGAGATTGACATCCAACCTCTGGTTTCTGCTGCCATAGCCCACGAGAATTCCACGTTAAATGAACCAATGGAATTCGGCAAGTTGGTAGCAAGCAAAGAAAACACCCTGGTAAAAGACAGTGTCATAAGCCTGACAGATGGGAAGGTGATGCAGGACGTCAGTCTCAAACTACAGAATGTCGAAAGGGGAGTGCTGGAGATCGAGCTTGAATGTGTTCCTCTTAGTCAATAG 1245 43.45 MAAVGIQKFCFFIVSRNDGYIQILAVFDDLGLNAWGLKMPTRQDNTDSNNGSGTGSSLLDLLRSDIYWNCRKEGQTSSGPRGRLENLLCQSGNNICADCGSPDPKWVSVSLGVFICIKCSGVHRSLGAHVSKVLSIKLDEWTDEQVDTLTGMGGNSEANMKYEASIPDYIRKPRPDSSTEERSDFIRRKYEMQQFFNSDEQMFCPFPPQEKKHYEKQTTTHRLHGLGLAFRNSWRRKEPEHKPVKKSSSSAGMIEFVGLIKVNVVKGTNLAVRDVMTSDPYVLLALGQQSVKTRVIKNNLNPVWNERLMLSIPEQIPPLRVFVYDKDTFSTDDFMGEAEIDIQPLVSAAIAHENSTLNEPMEFGKLVASKENTLVKDSVISLTDGKVMQDVSLKLQNVERGVLEIELECVPLSQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13randomg113 414 CDD ArfGap 84 190 - -
Vvi13randomg113 414 Gene3D Arf GTPase activating protein 68 203 IPR038508 -
Vvi13randomg113 414 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 71 414 IPR044518 GO:0005096|GO:0005543
Vvi13randomg113 414 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 71 414 - -
Vvi13randomg113 414 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 250 348 IPR035892 -
Vvi13randomg113 414 CDD C2_ArfGAP 257 401 - -
Vvi13randomg113 414 SMART C2_3c 259 354 IPR000008 -
Vvi13randomg113 414 PRINTS HIV Rev interacting protein signature 93 112 IPR001164 GO:0005096
Vvi13randomg113 414 PRINTS HIV Rev interacting protein signature 112 129 IPR001164 GO:0005096
Vvi13randomg113 414 PRINTS HIV Rev interacting protein signature 133 154 IPR001164 GO:0005096
Vvi13randomg113 414 SUPERFAMILY ArfGap/RecO-like zinc finger 83 197 IPR037278 -
Vvi13randomg113 414 SMART arf_gap_3 81 203 IPR001164 GO:0005096
Vvi13randomg113 414 Pfam C2 domain 259 349 IPR000008 -
Vvi13randomg113 414 ProSiteProfiles C2 domain profile. 238 355 IPR000008 -
Vvi13randomg113 414 Gene3D C2 domain 257 413 IPR035892 -
Vvi13randomg113 414 ProSiteProfiles ARF GTPase-activating proteins domain profile. 81 203 IPR001164 GO:0005096
Vvi13randomg113 414 Pfam Putative GTPase activating protein for Arf 84 197 IPR001164 GO:0005096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13randomg113 K12486 - vvi:100249811 715.301