Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13randomg138 ATGGCAGGAATGATTCAAGAGGACGGATCTTCATCTGTAACTTCGTCGCCCCTTCAAATCTTTTCCCTCATGTCACTTTCTCCGGGTTTGGGCTCACCATATCCCTGGCTTAAGGAGCTGAAATCCGAGGAGCGGGGTTTGTATCTTATCCGTCTTCTCGTGGCCTGTGCTAACCATGTTGCCGCTGGCAGCATTGAGAACGCAAATATTGGCCTTGAGCATATTTCCCATCTAGCTTCTCCTGATGGAGATACAGTCCAGCGAATAGCTGCTTATTTCACTGAAGCACTTGCTGATCGAATGCTGAAAGGTTGGCCTGGTTTGCACAAGGCCCTCAATTCGACAAAGATATCTTCTATATCTGAAGAGATTCTTGTCCAGAAATTGTTCTTTGAGCTCTGCCCCTTCCTGAAGCTCTCATATGTTATTACCAACCAGGCTATTATTGAAGCCATGGAAGGGGAGAAGATGGTTCATATTATTGACCTCAATTCATTTGAATCTGCCCAGTGGATTAATCTTCTTCAGTCATTAAGTGCACGGCCAGAAGGTCCACCCCATCTGAGAATTACAGGTATTCATGAACAGAAAGAGGTGTTGGATCTAATGGCTCTTCAGCTGACAAAAGAAGCCGAAAAATTGGATATCCCATTTCAATTTAATCCTATAGTTAGCAAATTAGAGAATCTTGATTTTGAAAGTCTGCGTGTTAAGACAGGAGAAGCACTTGCAATCAGCTCCGTACTACAACTTCATACTCTCTTGGCAATTGATGATGAGATGGTTGGAAAATCCCCTTCAGCATCCAAGAACACTAGTGCAGTTCACTTGCAGAGAATGGGGAGCTTTCTTGCTGCTCTTTGGGGCCTCTCACCAAAGCTGATGGTGGTAACAGAGCAAGAATCAAACAATAATTGTCCTACTCTGATGGAAAGAGTCATGGAAGCATTAAATTTTTATGCAGCACTATTTGATTGCTTGGAATCTACCTTATCAAGGGCTTCCATTGAGCGACAGAAAGTGGAGAAGATGCTTTTTGGAGAGGAAATTAAGAATATCATAGCATGTGAGGGACCCGAAAGGAAAGAGAGGCATGAAAAGCTTGAGAAATGGGTTATGAGGCTTGAGCTGGCTGGGTTTGGGAGGGTGCCTCTGAGCTACCAAGGAATGTTGCAGGCATCGAGGTTGCTGGTGAGTTATGGTTATGATGGGTATAGGATGAAAGAAGAGAATGGGTGTTTGGTCATTTGCTGGCAAGACCGGCCCCTTTTCTCTGTCTCTGCTTGGAGGTTTAAGAGGTATGATTAA 1308 44.19 MAGMIQEDGSSSVTSSPLQIFSLMSLSPGLGSPYPWLKELKSEERGLYLIRLLVACANHVAAGSIENANIGLEHISHLASPDGDTVQRIAAYFTEALADRMLKGWPGLHKALNSTKISSISEEILVQKLFFELCPFLKLSYVITNQAIIEAMEGEKMVHIIDLNSFESAQWINLLQSLSARPEGPPHLRITGIHEQKEVLDLMALQLTKEAEKLDIPFQFNPIVSKLENLDFESLRVKTGEALAISSVLQLHTLLAIDDEMVGKSPSASKNTSAVHLQRMGSFLAALWGLSPKLMVVTEQESNNNCPTLMERVMEALNFYAALFDCLESTLSRASIERQKVEKMLFGEEIKNIIACEGPERKERHEKLEKWVMRLELAGFGRVPLSYQGMLQASRLLVSYGYDGYRMKEENGCLVICWQDRPLFSVSAWRFKRYD* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13randomg138 435 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 3 265 - -
Vvi13randomg138 435 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 278 432 - -
Vvi13randomg138 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 278 432 IPR005202 -
Vvi13randomg138 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 265 IPR005202 -
Vvi13randomg138 435 Pfam GRAS domain family 49 430 IPR005202 -
Vvi13randomg138 435 ProSiteProfiles GRAS family profile. 40 430 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13925 PF03514 GRAS 8.70E-137 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13randomg138 - - vvi:100258442 829.706