Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13randomg138 ATGGCAGGAATGATTCAAGAGGACGGATCTTCATCTGTAACTTCGTCGCCCCTTCAAATCTTTTCCCTCATGTCACTTTCTCCGGGTTTGGGCTCACCATATCCCTGGCTTAAGGAGCTGAAATCCGAGGAGCGGGGTTTGTATCTTATCCGTCTTCTCGTGGCCTGTGCTAACCATGTTGCCGCTGGCAGCATTGAGAACGCAAATATTGGCCTTGAGCATATTTCCCATCTAGCTTCTCCTGATGGAGATACAGTCCAGCGAATAGCTGCTTATTTCACTGAAGCACTTGCTGATCGAATGCTGAAAGGTTGGCCTGGTTTGCACAAGGCCCTCAATTCGACAAAGATATCTTCTATATCTGAAGAGATTCTTGTCCAGAAATTGTTCTTTGAGCTCTGCCCCTTCCTGAAGCTCTCATATGTTATTACCAACCAGGCTATTATTGAAGCCATGGAAGGGGAGAAGATGGTTCATATTATTGACCTCAATTCATTTGAATCTGCCCAGTGGATTAATCTTCTTCAGTCATTAAGTGCACGGCCAGAAGGTCCACCCCATCTGAGAATTACAGGTATTCATGAACAGAAAGAGGTGTTGGATCTAATGGCTCTTCAGCTGACAAAAGAAGCCGAAAAATTGGATATCCCATTTCAATTTAATCCTATAGTTAGCAAATTAGAGAATCTTGATTTTGAAAGTCTGCGTGTTAAGACAGGAGAAGCACTTGCAATCAGCTCCGTACTACAACTTCATACTCTCTTGGCAATTGATGATGAGATGGTTGGAAAATCCCCTTCAGCATCCAAGAACACTAGTGCAGTTCACTTGCAGAGAATGGGGAGCTTTCTTGCTGCTCTTTGGGGCCTCTCACCAAAGCTGATGGTGGTAACAGAGCAAGAATCAAACAATAATTGTCCTACTCTGATGGAAAGAGTCATGGAAGCATTAAATTTTTATGCAGCACTATTTGATTGCTTGGAATCTACCTTATCAAGGGCTTCCATTGAGCGACAGAAAGTGGAGAAGATGCTTTTTGGAGAGGAAATTAAGAATATCATAGCATGTGAGGGACCCGAAAGGAAAGAGAGGCATGAAAAGCTTGAGAAATGGGTTATGAGGCTTGAGCTGGCTGGGTTTGGGAGGGTGCCTCTGAGCTACCAAGGAATGTTGCAGGCATCGAGGTTGCTGGTGAGTTATGGTTATGATGGGTATAGGATGAAAGAAGAGAATGGGTGTTTGGTCATTTGCTGGCAAGACCGGCCCCTTTTCTCTGTCTCTGCTTGGAGGTTTAAGAGGTATGATTAA 1308 44.19 MAGMIQEDGSSSVTSSPLQIFSLMSLSPGLGSPYPWLKELKSEERGLYLIRLLVACANHVAAGSIENANIGLEHISHLASPDGDTVQRIAAYFTEALADRMLKGWPGLHKALNSTKISSISEEILVQKLFFELCPFLKLSYVITNQAIIEAMEGEKMVHIIDLNSFESAQWINLLQSLSARPEGPPHLRITGIHEQKEVLDLMALQLTKEAEKLDIPFQFNPIVSKLENLDFESLRVKTGEALAISSVLQLHTLLAIDDEMVGKSPSASKNTSAVHLQRMGSFLAALWGLSPKLMVVTEQESNNNCPTLMERVMEALNFYAALFDCLESTLSRASIERQKVEKMLFGEEIKNIIACEGPERKERHEKLEKWVMRLELAGFGRVPLSYQGMLQASRLLVSYGYDGYRMKEENGCLVICWQDRPLFSVSAWRFKRYD* 436
       

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13randomg138 435 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 3 265 - -
Vvi13randomg138 435 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 278 432 - -
Vvi13randomg138 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 278 432 IPR005202 -
Vvi13randomg138 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 265 IPR005202 -
Vvi13randomg138 435 Pfam GRAS domain family 49 430 IPR005202 -
Vvi13randomg138 435 ProSiteProfiles GRAS family profile. 40 430 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13randomg138 - - - vvi:100258442 829.706
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi6g470 ECH 141 496 GRAS Transcription Factor Family AT2G29060 53.9 7.6e-120 428.3
Vvi6g470 ECH 136 496 GRAS Transcription Factor Family AT2G37650 55.0 7.8e-123 438.3
Vvi13g315 ECH 107 436 GRAS Transcription Factor Family AT2G37650 53.8 2.5e-113 406.8
Vvi9g92 . 1 495 GRAS Transcription Factor Family AT3G13840 53.7 1.3e-140 496.9
Vvi6g470 ECH 124 497 GRAS Transcription Factor Family AT3G46600 50.2 5.9e-110 395.2
Vvi6g470 ECH 139 496 GRAS Transcription Factor Family AT1G07530 57.1 6.1e-129 458.8
Vvi4g933 . 116 568 GRAS Transcription Factor Family AT4G36710 53.1 6.8e-118 421.4
Vvi8g4 ECH 290 650 GRAS Transcription Factor Family AT5G41920 58.8 9.1e-116 414.1
Vvi4g959 . 1 544 GRAS Transcription Factor Family AT5G66770 60.5 2.0e-172 602.8
Vvi19g614 ECH 1 525 GRAS Transcription Factor Family AT1G50600 59.5 7.5e-171 597.4
Vvi12g674 ECH 89 485 GRAS Transcription Factor Family AT1G50600 64.4 9.5e-158 553.9
Vvi19g405 . 177 393 GRAS Transcription Factor Family AT1G50600 61.3 1.3e-74 277.7
Vvi4g1306 ECH 192 332 GRAS Transcription Factor Family AT1G50600 57.4 2.2e-45 180.6
Vvi2g364 . 1 390 GRAS Transcription Factor Family AT1G63100 51.8 4.5e-96 349.4
Vvi2g365 . 1 135 GRAS Transcription Factor Family AT1G63100 57.8 2.7e-40 164.1
Vvi1g454 . 42 377 GRAS Transcription Factor Family AT1G14920 60.0 1.9e-121 433.3
Vvi14g715 . 1 242 GRAS Transcription Factor Family AT1G14920 62.3 7.8e-83 305.1
Vvi11g409 . 502 691 GRAS Transcription Factor Family AT1G14920 57.5 4.6e-59 226.1
Vvi19g799 . 36 414 GRAS Transcription Factor Family AT1G55580 55.7 2.1e-113 406.4
Vvi1g454 . 28 377 GRAS Transcription Factor Family AT1G66350 54.7 2.7e-109 392.9
Vvi14g715 . 1 234 GRAS Transcription Factor Family AT1G66350 67.7 6.1e-85 312.0
Vvi11g409 . 500 691 GRAS Transcription Factor Family AT1G66350 53.6 3.0e-55 213.4
Vvi12g674 ECH 55 485 GRAS Transcription Factor Family AT5G48150 71.8 2.2e-188 655.6
Vvi19g614 ECH 95 527 GRAS Transcription Factor Family AT5G48150 71.3 5.7e-181 630.9
Vvi19g405 . 181 393 GRAS Transcription Factor Family AT5G48150 66.2 1.1e-78 291.2
Vvi4g1306 ECH 191 332 GRAS Transcription Factor Family AT5G48150 57.7 4.4e-48 189.5
Vvi1g454 . 44 377 GRAS Transcription Factor Family AT2G01570 58.1 2.2e-123 439.9
Vvi14g715 . 1 242 GRAS Transcription Factor Family AT2G01570 54.4 2.1e-81 300.4
Vvi11g409 . 502 691 GRAS Transcription Factor Family AT2G01570 56.0 1.1e-56 218.4
Vvi1g454 . 28 377 GRAS Transcription Factor Family AT1G66350 54.7 2.7e-109 392.9
Vvi14g715 . 1 234 GRAS Transcription Factor Family AT1G66350 67.7 6.1e-85 312.0
Vvi11g409 . 500 691 GRAS Transcription Factor Family AT1G66350 53.6 3.0e-55 213.4
Vvi1g454 . 44 376 GRAS Transcription Factor Family AT3G03450 53.7 2.0e-102 370.2
Vvi14g715 . 1 243 GRAS Transcription Factor Family AT3G03450 58.5 1.6e-78 290.8
Vvi11g409 . 506 691 GRAS Transcription Factor Family AT3G03450 52.6 1.4e-50 198.0
Vvi1g454 . 40 382 GRAS Transcription Factor Family AT5G17490 52.8 6.1e-96 348.6
Vvi14g715 . 1 236 GRAS Transcription Factor Family AT5G17490 61.1 5.7e-70 262.3
Vvi18g1195 ECH 1 336 GRAS Transcription Factor Family AT1G21450 56.8 3.3e-122 436.0
Vvi12g674 ECH 136 485 GRAS Transcription Factor Family AT1G21450 55.3 1.6e-113 407.1
Vvi4g1306 ECH 191 332 GRAS Transcription Factor Family AT1G21450 78.3 4.2e-61 233.0
Vvi19g405 . 183 393 GRAS Transcription Factor Family AT1G21450 52.4 3.0e-59 226.9
Vvi6g470 ECH 134 498 GRAS Transcription Factor Family AT5G59450 50.4 2.7e-111 399.8
Vvi19g614 ECH 1 525 GRAS Transcription Factor Family AT4G17230 53.6 6.7e-151 531.2
Vvi12g674 ECH 1 484 GRAS Transcription Factor Family AT4G17230 50.8 3.0e-143 505.8
Vvi19g405 . 181 393 GRAS Transcription Factor Family AT4G17230 54.0 1.6e-64 244.2
Vvi4g1306 ECH 191 331 GRAS Transcription Factor Family AT4G17230 51.1 4.0e-39 159.8
Vvi19g614 ECH 116 527 GRAS Transcription Factor Family AT2G04890 65.4 2.0e-155 545.8
Vvi12g674 ECH 128 485 GRAS Transcription Factor Family AT2G04890 73.5 1.7e-154 542.7
Vvi19g405 . 182 393 GRAS Transcription Factor Family AT2G04890 64.6 2.2e-77 286.6
Vvi4g1306 ECH 191 332 GRAS Transcription Factor Family AT2G04890 56.3 1.3e-48 191.0
Vvi13randomg138 . 1 433 GRAS Transcription Factor Family AT1G50420 62.0 6.9e-163 570.9
Vvi6g948 ECH 5 279 GRAS Transcription Factor Family AT1G50420 70.2 3.9e-105 379.0
Vvi15g419 . 84 573 GRAS Transcription Factor Family AT4G00150 57.0 1.0e-141 500.7
Vvi2g526 . 148 512 GRAS Transcription Factor Family AT4G00150 52.7 5.3e-98 355.5
Vvi4g959 . 1 544 GRAS Transcription Factor Family AT3G50650 53.6 8.9e-143 504.2
Vvi8g4 ECH 98 649 GRAS Transcription Factor Family AT3G54220 65.2 2.5e-208 722.2
Vvi7g919 . 52 419 GRAS Transcription Factor Family AT4G37650 68.1 4.6e-152 535.0
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13925 PF03514 GRAS 8.70E-137 CL0063 Vvi TF