Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13randomg92 ATGGGTATGGCCACAGAAGCTCAGTTCCATGTTCTAGCTGTTGATGACAGCATCATAGATAGAAAGCTGATTGAGAAGCTCCTCAAAACCTCTTCTTATCAAGTTACTGCTGTGGATTCTGGGAGTAAGGCCCTGGAATTTCTGGGTTTGCAAGAGGCTGAGCAGAGAAATCTAAGCCCTCCCTCTCTTTGTCCAAGCCAGGAAATGGAAGTGAATTTGATCATTACAGACTATTGTATGCCTGGGATGACTGGCTATGATCTCCTCAGAAAGATTAAGGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGATGTTTGGAAGAAGGAGCAGAAGATTTCTTCCTGAAACCTGTTCAATTATCAGATGTGAACAAGCTTAGACCCCATCTACTGAAGGGAAAAAAGAAGAAGAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTGA 513 41.91 MGMATEAQFHVLAVDDSIIDRKLIEKLLKTSSYQVTAVDSGSKALEFLGLQEAEQRNLSPPSLCPSQEMEVNLIITDYCMPGMTGYDLLRKIKESTSLKDIPVVIMSSENIPSRINRCLEEGAEDFFLKPVQLSDVNKLRPHLLKGKKKKRKKKKRKKKKKKKKKKKKKN* 171
       

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13randomg92 170 CDD REC_typeA_ARR 11 139 - -
Vvi13randomg92 170 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 159 IPR045279 GO:0009736
Vvi13randomg92 170 MobiDBLite consensus disorder prediction 138 170 - -
Vvi13randomg92 170 SMART REC_2 9 140 IPR001789 GO:0000160
Vvi13randomg92 170 Pfam Response regulator receiver domain 11 136 IPR001789 GO:0000160
Vvi13randomg92 170 Coils Coil 144 170 - -
Vvi13randomg92 170 ProSiteProfiles Response regulatory domain profile. 10 144 IPR001789 GO:0000160
Vvi13randomg92 170 SUPERFAMILY CheY-like 9 145 IPR011006 -
Vvi13randomg92 170 MobiDBLite consensus disorder prediction 142 170 - -
Vvi13randomg92 170 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 2 159 - -
Vvi13randomg92 170 Gene3D - 10 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13randomg92 K14492 ARR-A; two-component response regulator ARR-A family - vvi:100253216 288.115
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi1g504 . 67 334 Response Regulator Gene Family AT3G16857 55.1 5.7e-77 285.8
Vvi4g523 ECH 53 327 Response Regulator Gene Family AT3G16857 58.9 8.9e-62 235.3
Vvi17g903 . 52 228 Response Regulator Gene Family AT3G16857 52.9 3.4e-53 206.8
Vvi1g504 . 22 284 Response Regulator Gene Family AT4G31920 53.8 7.6e-73 271.9
Vvi5g113 ECH 25 272 Response Regulator Gene Family AT4G31920 57.0 1.6e-70 264.2
Vvi17g903 . 11 231 Response Regulator Gene Family AT4G31920 54.7 1.4e-63 241.1
Vvi1g1119 ECH 11 259 Response Regulator Gene Family AT4G31920 51.8 5.5e-63 239.2
Vvi11g1023 . 14 207 Response Regulator Gene Family AT4G31920 56.7 1.7e-48 191.0
Vvi17g903 . 92 279 Response Regulator Gene Family AT1G67710 51.7 1.2e-52 204.5
Vvi17g904 ECH 58 236 Response Regulator Gene Family AT1G67710 56.7 2.4e-48 190.3
Vvi1g504 . 27 290 Response Regulator Gene Family AT2G25180 59.0 1.5e-79 294.3
Vvi5g113 ECH 27 389 Response Regulator Gene Family AT2G25180 50.4 7.7e-79 292.0
Vvi17g903 . 11 228 Response Regulator Gene Family AT2G25180 56.4 9.4e-69 258.5
Vvi1g1119 ECH 11 256 Response Regulator Gene Family AT2G25180 56.2 3.6e-68 256.5
Vvi1g504 . 88 337 Response Regulator Gene Family AT2G01760 59.5 2.6e-65 246.1
Vvi5g113 ECH 88 321 Response Regulator Gene Family AT2G01760 52.7 1.5e-52 203.8
Vvi1g1119 ECH 72 259 Response Regulator Gene Family AT2G01760 50.5 8.3e-48 188.0
Vvi11g640 ECH 79 239 Response Regulator Gene Family AT2G01760 52.8 1.0e-45 181.0
Vvi5g113 ECH 27 318 Response Regulator Gene Family AT5G58080 52.5 4.5e-69 259.6
Vvi17g903 . 9 230 Response Regulator Gene Family AT5G58080 53.7 7.4e-64 242.3
Vvi11g1023 . 14 207 Response Regulator Gene Family AT5G58080 51.2 3.0e-41 167.2
Vvi5g113 ECH 21 251 Response Regulator Gene Family AT4G16110 72.4 1.1e-83 308.1
Vvi1g504 . 26 257 Response Regulator Gene Family AT4G16110 60.4 8.0e-69 258.8
Vvi11g640 ECH 18 213 Response Regulator Gene Family AT4G16110 52.1 8.0e-61 232.3
Vvi4g523 ECH 11 240 Response Regulator Gene Family AT4G16110 68.1 1.8e-60 231.1
Vvi1g1119 ECH 10 235 Response Regulator Gene Family AT4G16110 55.8 1.2e-59 228.4
Vvi17g903 . 10 207 Response Regulator Gene Family AT4G16110 54.5 1.3e-58 224.9
Vvi11g1023 . 15 137 Response Regulator Gene Family AT4G16110 61.8 2.1e-37 154.5
Vvi17g678 ECH 88 255 Response Regulator Gene Family AT3G48100 70.1 8.8e-58 220.3
Vvi1g794 ECH 20 161 Response Regulator Gene Family AT3G48100 72.0 4.7e-51 198.0
Vvi13randomg98 . 10 160 Response Regulator Gene Family AT3G48100 57.6 4.7e-43 171.4
Vvi13randomg93 . 3 132 Response Regulator Gene Family AT3G48100 62.5 1.5e-41 166.4
Vvi8g1179 . 10 146 Response Regulator Gene Family AT3G48100 62.0 7.5e-41 164.1
Vvi13randomg92 . 3 148 Response Regulator Gene Family AT3G48100 56.2 1.3e-40 163.3
Vvi13randomg96 . 3 153 Response Regulator Gene Family AT3G48100 55.6 2.4e-39 159.1
Vvi13g176 . 10 134 Response Regulator Gene Family AT3G48100 60.8 1.6e-38 156.4
Vvi2g607 . 1 548 Response Regulator Gene Family AT4G18020 51.0 5.7e-126 448.4
Vvi1g794 ECH 22 175 Response Regulator Gene Family AT1G59940 73.4 5.3e-58 221.9
Vvi17g678 ECH 68 292 Response Regulator Gene Family AT1G59940 50.2 4.3e-52 202.2
Vvi13randomg92 . 8 148 Response Regulator Gene Family AT1G59940 61.7 1.8e-42 170.2
Vvi13randomg98 . 8 139 Response Regulator Gene Family AT1G59940 64.4 6.9e-42 168.3
Vvi13g176 . 7 137 Response Regulator Gene Family AT1G59940 63.4 1.5e-41 167.2
Vvi13randomg93 . 8 131 Response Regulator Gene Family AT1G59940 68.2 2.9e-40 162.9
Vvi8g1179 . 8 144 Response Regulator Gene Family AT1G59940 60.6 3.8e-40 162.5
Vvi13randomg96 . 8 152 Response Regulator Gene Family AT1G59940 58.6 2.1e-38 156.8
Vvi1g794 ECH 16 190 Response Regulator Gene Family AT1G10470 71.4 4.0e-58 221.9
Vvi17g678 ECH 102 264 Response Regulator Gene Family AT1G10470 64.3 3.6e-51 198.7
Vvi13g176 . 7 137 Response Regulator Gene Family AT1G10470 65.6 1.8e-42 169.9
Vvi13randomg92 . 10 148 Response Regulator Gene Family AT1G10470 60.4 4.5e-41 165.2
Vvi13randomg98 . 10 137 Response Regulator Gene Family AT1G10470 64.8 4.5e-41 165.2
Vvi8g1179 . 10 144 Response Regulator Gene Family AT1G10470 62.2 2.2e-40 162.9
Vvi13randomg93 . 10 131 Response Regulator Gene Family AT1G10470 66.9 5.5e-39 158.3
Vvi13randomg96 . 10 152 Response Regulator Gene Family AT1G10470 58.7 4.6e-38 155.2
Vvi17g678 ECH 88 255 Response Regulator Gene Family AT3G48100 70.1 8.8e-58 220.3
Vvi1g794 ECH 20 161 Response Regulator Gene Family AT3G48100 72.0 4.7e-51 198.0
Vvi13randomg98 . 10 160 Response Regulator Gene Family AT3G48100 57.6 4.7e-43 171.4
Vvi13randomg93 . 3 132 Response Regulator Gene Family AT3G48100 62.5 1.5e-41 166.4
Vvi8g1179 . 10 146 Response Regulator Gene Family AT3G48100 62.0 7.5e-41 164.1
Vvi13randomg92 . 3 148 Response Regulator Gene Family AT3G48100 56.2 1.3e-40 163.3
Vvi13randomg96 . 3 153 Response Regulator Gene Family AT3G48100 55.6 2.4e-39 159.1
Vvi13g176 . 10 134 Response Regulator Gene Family AT3G48100 60.8 1.6e-38 156.4
Vvi17g678 ECH 86 235 Response Regulator Gene Family AT5G62920 73.9 6.1e-59 224.2
Vvi1g794 ECH 26 175 Response Regulator Gene Family AT5G62920 71.3 8.6e-53 203.8
Vvi13randomg93 . 10 132 Response Regulator Gene Family AT5G62920 67.2 5.2e-42 167.9
Vvi13randomg98 . 10 163 Response Regulator Gene Family AT5G62920 57.8 5.2e-42 167.9
Vvi13randomg92 . 10 145 Response Regulator Gene Family AT5G62920 61.0 9.9e-41 163.7
Vvi8g1179 . 10 151 Response Regulator Gene Family AT5G62920 60.6 2.2e-40 162.5
Vvi13randomg96 . 10 153 Response Regulator Gene Family AT5G62920 59.0 9.2e-39 157.1
Vvi13g176 . 7 134 Response Regulator Gene Family AT5G62920 63.3 1.6e-38 156.4
Vvi13randomg94 . 10 136 Response Regulator Gene Family AT5G62920 63.3 7.8e-38 154.1
Vvi17g678 ECH 78 253 Response Regulator Gene Family AT1G19050 65.3 5.0e-54 208.0
Vvi1g794 ECH 29 184 Response Regulator Gene Family AT1G19050 66.2 8.3e-49 190.7
Vvi13randomg98 . 8 144 Response Regulator Gene Family AT1G19050 56.9 7.1e-40 161.0
Vvi8g1179 . 5 144 Response Regulator Gene Family AT1G19050 57.1 3.5e-39 158.7
Vvi13g176 . 8 134 Response Regulator Gene Family AT1G19050 59.8 5.1e-38 154.8
Vvi13randomg92 . 5 147 Response Regulator Gene Family AT1G19050 53.5 1.5e-37 153.3
Vvi13randomg93 . 8 128 Response Regulator Gene Family AT1G19050 59.5 9.6e-37 150.6
Vvi8g1179 . 1 146 Response Regulator Gene Family AT2G41310 77.7 4.7e-61 231.5
Vvi13randomg92 . 1 147 Response Regulator Gene Family AT2G41310 67.6 2.0e-51 199.5
Vvi13randomg98 . 1 149 Response Regulator Gene Family AT2G41310 63.5 4.4e-51 198.4
Vvi13randomg93 . 1 132 Response Regulator Gene Family AT2G41310 64.8 1.1e-46 183.7
Vvi13randomg96 . 1 153 Response Regulator Gene Family AT2G41310 58.8 2.7e-45 179.1
Vvi1g794 ECH 26 157 Response Regulator Gene Family AT2G41310 62.1 1.7e-42 169.9
Vvi13randomg94 . 1 136 Response Regulator Gene Family AT2G41310 61.4 3.7e-42 168.7
Vvi17g678 ECH 101 232 Response Regulator Gene Family AT2G41310 62.1 8.3e-42 167.5
Vvi13randomg95 . 1 117 Response Regulator Gene Family AT2G41310 64.6 3.5e-40 162.2
Vvi13g176 . 1 137 Response Regulator Gene Family AT2G41310 54.9 1.0e-39 160.6
Vvi18g251 . 13 176 Response Regulator Gene Family AT2G41310 53.3 1.3e-39 160.2
Vvi8g1179 . 1 146 Response Regulator Gene Family AT3G57040 78.7 5.7e-62 234.6
Vvi13randomg92 . 1 147 Response Regulator Gene Family AT3G57040 69.5 1.2e-54 210.3
Vvi13randomg98 . 1 145 Response Regulator Gene Family AT3G57040 65.6 5.4e-52 201.4
Vvi13randomg93 . 1 132 Response Regulator Gene Family AT3G57040 68.0 3.8e-50 195.3
Vvi13randomg96 . 1 153 Response Regulator Gene Family AT3G57040 63.6 3.8e-50 195.3
Vvi13randomg94 . 1 136 Response Regulator Gene Family AT3G57040 64.6 2.0e-46 183.0
Vvi1g794 ECH 26 157 Response Regulator Gene Family AT3G57040 61.3 4.6e-43 171.8
Vvi13randomg95 . 1 117 Response Regulator Gene Family AT3G57040 67.4 7.8e-43 171.0
Vvi17g678 ECH 98 232 Response Regulator Gene Family AT3G57040 61.4 2.3e-42 169.5
Vvi18g251 . 15 176 Response Regulator Gene Family AT3G57040 54.0 7.3e-41 164.5
Vvi13g176 . 10 137 Response Regulator Gene Family AT3G57040 56.9 1.0e-39 160.6
Vvi17g678 ECH 97 258 Response Regulator Gene Family AT1G74890 71.6 1.7e-57 219.5
Vvi1g794 ECH 26 184 Response Regulator Gene Family AT1G74890 65.8 3.4e-50 195.3
Vvi13randomg98 . 8 156 Response Regulator Gene Family AT1G74890 57.0 1.1e-40 163.7
Vvi8g1179 . 4 144 Response Regulator Gene Family AT1G74890 58.2 5.4e-40 161.4
Vvi13g176 . 8 134 Response Regulator Gene Family AT1G74890 63.3 2.7e-39 159.1
Vvi13randomg92 . 8 146 Response Regulator Gene Family AT1G74890 54.7 1.1e-37 153.7
Vvi13randomg93 . 8 128 Response Regulator Gene Family AT1G74890 61.1 4.3e-37 151.8
Vvi13g176 . 7 139 Response Regulator Gene Family AT2G40670 73.5 3.9e-49 191.4
Vvi1g794 ECH 24 157 Response Regulator Gene Family AT2G40670 60.9 2.0e-40 162.5
Vvi8g1179 . 6 147 Response Regulator Gene Family AT2G40670 53.8 3.7e-39 158.3
Vvi17g678 ECH 96 232 Response Regulator Gene Family AT2G40670 57.7 5.3e-38 154.5
Vvi13randomg98 . 6 142 Response Regulator Gene Family AT2G40670 55.7 6.9e-38 154.1
Vvi13randomg92 . 6 145 Response Regulator Gene Family AT2G40670 53.9 2.0e-37 152.5
Vvi13randomg93 . 6 136 Response Regulator Gene Family AT2G40670 53.6 1.0e-36 150.2
Vvi13g176 . 7 137 Response Regulator Gene Family AT3G56380 79.5 1.1e-53 206.5
Vvi13randomg98 . 4 139 Response Regulator Gene Family AT3G56380 60.6 1.5e-42 169.5
Vvi1g794 ECH 18 157 Response Regulator Gene Family AT3G56380 60.6 1.5e-42 169.5
Vvi13randomg92 . 6 145 Response Regulator Gene Family AT3G56380 58.9 1.1e-40 163.3
Vvi8g1179 . 4 147 Response Regulator Gene Family AT3G56380 54.5 3.1e-40 161.8
Vvi17g678 ECH 97 232 Response Regulator Gene Family AT3G56380 57.2 1.3e-38 156.4
Vvi13randomg93 . 6 136 Response Regulator Gene Family AT3G56380 57.2 1.3e-38 156.4
Vvi13randomg96 . 6 157 Response Regulator Gene Family AT3G56380 53.6 1.3e-38 156.4
Vvi1g504 . 67 334 Response Regulator Gene Family AT3G16857 55.1 5.7e-77 285.8
Vvi4g523 ECH 53 327 Response Regulator Gene Family AT3G16857 58.9 8.9e-62 235.3
Vvi17g903 . 52 228 Response Regulator Gene Family AT3G16857 52.9 3.4e-53 206.8
Vvi5g113 ECH 21 251 Response Regulator Gene Family AT4G16110 72.4 1.1e-83 308.1
Vvi1g504 . 26 257 Response Regulator Gene Family AT4G16110 60.4 8.0e-69 258.8
Vvi11g640 ECH 18 213 Response Regulator Gene Family AT4G16110 52.1 8.0e-61 232.3
Vvi4g523 ECH 11 240 Response Regulator Gene Family AT4G16110 68.1 1.8e-60 231.1
Vvi1g1119 ECH 10 235 Response Regulator Gene Family AT4G16110 55.8 1.2e-59 228.4
Vvi17g903 . 10 207 Response Regulator Gene Family AT4G16110 54.5 1.3e-58 224.9
Vvi11g1023 . 15 137 Response Regulator Gene Family AT4G16110 61.8 2.1e-37 154.5
Vvi1g504 . 22 284 Response Regulator Gene Family AT4G31920 53.8 7.6e-73 271.9
Vvi5g113 ECH 25 272 Response Regulator Gene Family AT4G31920 57.0 1.6e-70 264.2
Vvi17g903 . 11 231 Response Regulator Gene Family AT4G31920 54.7 1.4e-63 241.1
Vvi1g1119 ECH 11 259 Response Regulator Gene Family AT4G31920 51.8 5.5e-63 239.2
Vvi11g1023 . 14 207 Response Regulator Gene Family AT4G31920 56.7 1.7e-48 191.0
Vvi17g903 . 92 279 Response Regulator Gene Family AT1G67710 51.7 1.2e-52 204.5
Vvi17g904 ECH 58 236 Response Regulator Gene Family AT1G67710 56.7 2.4e-48 190.3
Vvi1g504 . 27 290 Response Regulator Gene Family AT2G25180 59.0 1.5e-79 294.3
Vvi5g113 ECH 27 389 Response Regulator Gene Family AT2G25180 50.4 7.7e-79 292.0
Vvi17g903 . 11 228 Response Regulator Gene Family AT2G25180 56.4 9.4e-69 258.5
Vvi1g1119 ECH 11 256 Response Regulator Gene Family AT2G25180 56.2 3.6e-68 256.5
Vvi1g504 . 88 337 Response Regulator Gene Family AT2G01760 59.5 2.6e-65 246.1
Vvi5g113 ECH 88 321 Response Regulator Gene Family AT2G01760 52.7 1.5e-52 203.8
Vvi1g1119 ECH 72 259 Response Regulator Gene Family AT2G01760 50.5 8.3e-48 188.0
Vvi11g640 ECH 79 239 Response Regulator Gene Family AT2G01760 52.8 1.0e-45 181.0
Vvi5g113 ECH 27 318 Response Regulator Gene Family AT5G58080 52.5 4.5e-69 259.6
Vvi17g903 . 9 230 Response Regulator Gene Family AT5G58080 53.7 7.4e-64 242.3
Vvi11g1023 . 14 207 Response Regulator Gene Family AT5G58080 51.2 3.0e-41 167.2
Vvi2g607 . 1 548 Response Regulator Gene Family AT4G18020 51.0 5.7e-126 448.4
Vvi16g961 ECH 28 170 Response Regulator Gene Family AT5G60100 62.2 1.3e-45 181.0
Vvi8g673 ECH 59 200 Response Regulator Gene Family AT5G60100 61.8 5.5e-44 175.6
Vvi15g611 ECH 3 130 Response Regulator Gene Family AT5G60100 62.5 8.2e-40 161.8
Vvi6g346 ECH 84 216 Response Regulator Gene Family AT5G24470 59.4 3.1e-42 170.2
Vvi8g673 ECH 59 205 Response Regulator Gene Family AT5G24470 54.0 1.4e-37 154.8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13929 PF00072 Response_reg 7.00E-21 CL0304 Vvi TR