Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13randomg98 ATGGATATGGCAATAGAGGCACAGTTCCATGTTCTTGCTGTTGATGACAACCTCATAGATAGAAAATTGATTGAAAAGCTCCTCAAAACCTCTTCTTTTCAAGTTACTGCTGTGGATTCTGGGAGCAAGGCTCTGGAATTTCTGGGTCTGCAAGAGGAAGAGCAGAGGAATCATCATCCCCAAGAAATGGAAGTAAATTTAATTATCACGGATTATTCCATGCCTGGAATGACTGGCTATGATCTCCTCAGAAAGATCAAGGAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGATGTCTGGAAGAAGGAGCAGAAGATTTCTTCCTGAAGCCGGTCCAATTATCGGATGTGAGCAAGCTTAGACCCCATTTACTGAGAAGAAAAGCTGAGGAAGAAGAAGAAAAACCCAAGAGAAATATTAGAAAAAGAAAGACAATTGAAGAGAGCCTCACCCATATGCTGATGGAGGATTTGGATAAGTTCATCTCGATTGAAGACATTTTTGGAGAGTTGAATTATGAATTCTCACATAAACGTTGGAAGTTTGGATCTTAG 594 40.24 MDMAIEAQFHVLAVDDNLIDRKLIEKLLKTSSFQVTAVDSGSKALEFLGLQEEEQRNHHPQEMEVNLIITDYSMPGMTGYDLLRKIKESSSLKDIPVVIMSSENIPSRINRCLEEGAEDFFLKPVQLSDVSKLRPHLLRRKAEEEEEKPKRNIRKRKTIEESLTHMLMEDLDKFISIEDIFGELNYEFSHKRWKFGS* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13randomg98 197 PANTHER RESPONSE REGULATOR RECEIVER DOMAIN PROTEIN 3 162 - -
Vvi13randomg98 197 CDD REC_typeA_ARR 11 133 - -
Vvi13randomg98 197 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 162 IPR045279 GO:0009736
Vvi13randomg98 197 SMART REC_2 9 134 IPR001789 GO:0000160
Vvi13randomg98 197 Pfam Response regulator receiver domain 11 130 IPR001789 GO:0000160
Vvi13randomg98 197 SUPERFAMILY CheY-like 9 149 IPR011006 -
Vvi13randomg98 197 Gene3D - 10 182 - -
Vvi13randomg98 197 ProSiteProfiles Response regulatory domain profile. 10 138 IPR001789 GO:0000160
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13934 PF00072 Response_reg 2.60E-22 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13randomg98 K14492 - vvi:100265255 380.178