Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g102 ATGGATGATTTGTATAGACTCCAGCATGAAGGCATCTCCATCTCTGGTGCCAACGCCGCTGCTGCGACCATCGATTTCCGCAGATCAGTGGAGAACAGTAACGTGTACCGGTTCGAATCGGTGGAAACGGAGGCCGGTATGTCGGATCTGATCAAGTCTCAGATCGTCAACCATCCTCGGTACCCTAACTTAGTCTCCGCCTACATTGAGTGTCGAAAGGTCGGAGCGCCGCCAGAAATGGCGTCGCTGCTGGAAGAAATCGGCCGAGAGAGTCAACCGATGAACAGTCGCAGCGGAGAAATTGGTGCCGATCCAGAACTCGACGAGTTCATGGAATCGTACTGTGAGGTTCTTCATAGATACAAGGAGGAGCTCTCGAAACCCTTCGATGAAGCGACGTCGTTTTTGAGCGACATCGAGTCGCAGCTCAGTAACCTCTGCAAAGGAGCGTTGACGGCGGGGACCTCGGGAAGCTACTACTCTGATGAAGCAGCTGGGACTTCAGAGGAGGAGTTAAGCTGTGGAGAGGCAGAAGTATCTGAAAGTCAAGAATCTTTGGGTGCTCGCCCAGGTGACCAGGAGCTTAAGGAAATGCTCATGCGCAAGTATAGTGGCTACCTAAGCAGTTTGAGAAAAGAATTCTTGAAGAAACGGAAGAAAGGTAAGTTACCAAAGGATGCAAGGACAATGTTGCTGGAATGGTGGAATACCCATTATAGATGGCCATATCCCACGGAAGATGAGAAATTGAAGCTATCAGAGGTTACTGGACTAGACCAGAAGCAGATTAACAACTGGTTCATAAACCAGAGGAAGCGGCATTGGAAACCATCAGAAGACATGAGATTTGCTCTTATTGATGGTGTCAGCGGCAACATGGGAGGAGGGCCCGTGTTCTTAGACACCAGGGGTGGAACTGGAAGCAATATTTGA 933 49.84 MDDLYRLQHEGISISGANAAAATIDFRRSVENSNVYRFESVETEAGMSDLIKSQIVNHPRYPNLVSAYIECRKVGAPPEMASLLEEIGRESQPMNSRSGEIGADPELDEFMESYCEVLHRYKEELSKPFDEATSFLSDIESQLSNLCKGALTAGTSGSYYSDEAAGTSEEELSCGEAEVSESQESLGARPGDQELKEMLMRKYSGYLSSLRKEFLKKRKKGKLPKDARTMLLEWWNTHYRWPYPTEDEKLKLSEVTGLDQKQINNWFINQRKRHWKPSEDMRFALIDGVSGNMGGGPVFLDTRGGTGSNI* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 928359 935678 + Vvi14g102 Vvi14g102 775169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g102 310 CDD homeodomain 226 278 IPR001356 GO:0003677
Vvi14g102 310 SMART KNOX2_2 97 148 IPR005541 GO:0003677|GO:0005634
Vvi14g102 310 Gene3D - 212 284 - -
Vvi14g102 310 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Vvi14g102 310 SMART HOX_1 216 281 IPR001356 GO:0003677
Vvi14g102 310 Pfam KNOX2 domain 101 147 IPR005541 GO:0003677|GO:0005634
Vvi14g102 310 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Vvi14g102 310 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 20 288 - -
Vvi14g102 310 SMART ELK_2 194 215 IPR005539 GO:0003677
Vvi14g102 310 SMART KNOX1_2 49 93 IPR005540 GO:0003677|GO:0005634
Vvi14g102 310 Pfam KNOX1 domain 51 92 IPR005540 GO:0003677|GO:0005634
Vvi14g102 310 Pfam ELK domain 194 215 IPR005539 GO:0003677
Vvi14g102 310 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Vvi14g102 310 SUPERFAMILY Homeodomain-like 216 286 IPR009057 -
Vvi14g102 310 ProSitePatterns 'Homeobox' domain signature. 252 275 IPR017970 GO:0000981|GO:0006355
Vvi14g102 310 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 20 288 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13935 PF03791 KNOX2 3.30E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g102 - - vvi:100264808 589.341