Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1029 ATGCAAACTGAGAATCCTCAACTTCCTCCCAGTGCTGAAGTGGTTGGAAATGCTTTCGTCGAGCAGTATTACTATGTTCTTCACCGTTCCCCAGAATTGGTTTTCAGATTTTATCGGGATTCAAGTGTGATGAGCTGGCCAGATTCAAATGGGCTTATGTCATCAGTGACAACCATGCAAGGTATCAATGAGAAGATTCTTTCATCTGAGTTCAAGAACAGGAAGACAGAAATAATGACTACAGATTCTCAGAGCTCTTATGAAGGAGGGGTAATTGTTCTAGTAACTGGATGCTTAATGACCAAGGATAAACGGAGAAAAAAGTTCACACAATCATTTTTTCTTGCTCCACAATACAATGGATACTATGTCCTGAATGATGTTTTAAGGTATATTGTGGATGGTGAAGCATTGGAAACCATTCCAATTAATGGAACCAATGATTCCCCTGCAGTCTCCTTGAACCAAGGTCCAGGGCACACTCATGATCCTGATCCTCCTGTGCCAGACCCAGCAACTTCTGTTGTGGAAGATGATGAGATTGTTATTGAGAAAGTCTATGATCCACTGGAAAATGAGGAACAATTAGTTAATGAAGAAGAGGATTTTACAGAAACTCAGTCTCATCCAATTGAGAATGATGATTCTACTATTGCAGAATCATCTTCTTCTTCTGCCCAAGAGGATGCTCCAAAGAAGTCTTATGCCTCAATTGTAAAAGTGATGAAGGGCAGTTCAGGGTCTACCAAAGTTTATGTGCCTACCAAAACTACGAAAGTGACTCCTGCAAAAACTGAGAACCAGTCACCTGGGCTGGCAGCACCTGCTCCAGTGCCTGAATCATCAGTCACAAGTAGCATCAATGCCCCTGAAAGTAGTGATGCTCCCGAGGAAGTTGAGGGCCACTCAATTTACATCCGGAATTTGCCCTTAAATGTGACTGTTTCTCAGCTTGAGGCTGAATTCCAGAAATTTGGACCTATCAAGCAGGGTGGTGTCCAAGTCAGAAGTAATAAGCAACAGGCATACTGTTTTGGCTTTGTTGAATTTCTGTCATTGAGCTCCATGCACAGTGCAATTCAGGCTTCACCCATCATTATTGGGGATCATCAAGCTGTTGTTGAGATAAAGAGAACTACAACTCGAGTTGGCAGTGGGAGAGGAGGTAGATTCCCTTCCGGAAGGGGTGTGTTCCGGGGCCGGGGAAGTTTTGGTGGTGGAAGAGGGTTTGTTAGAATCGAGTATGGAATCCGGGGCGAGTTTTCAGGGCGAGGTAGGGGTCCAAGTGGGCGCAGTGGAGGAGAAGGCTATCGACAAGGACGAGGGAGAGCTGGGCGTCCAAGTGGGCACACCCAGAATGCTGATAGAGCTGAGTCTGGGGCTATCATTGAACGGTCGTTTTGGGACGGAGGAGGAGTGGAGGAAGAGAAAGGAGTTGCAGACGCTGAGAAGATTGGAAGCCAAGAGGAAGAGAACGGCGAAGCAGAGAATTGGACTATAGGAGGCTTCATACCTAGCAAAACCGAAAGAGCTAATGGGTTGGGTGATGGTGGTTTGAAGGGAAATACAACACCACCACCACCTCCACCGCCACCACTACCACCATCATCACAAGGGTCAGTGGGATCGCAAAGGAGTTCTTCTGGGATTTCCGAATTCGAGAGCCAACCAATGCAAGTTAAAGGAGTGAACAAATGCAGTGAAGCAAGAAGCCCAGCAAGTATTCAGTCTTTACCAGGCCAGAGTGAGCAGAAACCCTTAATCAGTCCTGGGACACCAGAGAAATCAGGCAAGGTTGGAGGAGTAGTGGCAGAGAATCAACCTAAGAAACCCACAATTTCTAGCAGGGGAGTAAGTGAAATGGCAAGGAAGGTGATGGAAGATATGCCGTGTGTGTCTACCACAGGAGATGGCCCCAATGGGAAAAAGGTAGATGGCTTTCTTTACAGGTATAAGAAGGGAGAGGAGGTGAGAATAGTATGTGTTTGCCATGGAACCTTTCTGTCTCCCGCTGAGTTTGTTAAGCATGCTGGTGGCAGTGATGTTGCTCACCCGTTGCGGCATATAGTTGTTTACCCATCTTCTCTTTTGTAA 2094 46.13 MQTENPQLPPSAEVVGNAFVEQYYYVLHRSPELVFRFYRDSSVMSWPDSNGLMSSVTTMQGINEKILSSEFKNRKTEIMTTDSQSSYEGGVIVLVTGCLMTKDKRRKKFTQSFFLAPQYNGYYVLNDVLRYIVDGEALETIPINGTNDSPAVSLNQGPGHTHDPDPPVPDPATSVVEDDEIVIEKVYDPLENEEQLVNEEEDFTETQSHPIENDDSTIAESSSSSAQEDAPKKSYASIVKVMKGSSGSTKVYVPTKTTKVTPAKTENQSPGLAAPAPVPESSVTSSINAPESSDAPEEVEGHSIYIRNLPLNVTVSQLEAEFQKFGPIKQGGVQVRSNKQQAYCFGFVEFLSLSSMHSAIQASPIIIGDHQAVVEIKRTTTRVGSGRGGRFPSGRGVFRGRGSFGGGRGFVRIEYGIRGEFSGRGRGPSGRSGGEGYRQGRGRAGRPSGHTQNADRAESGAIIERSFWDGGGVEEEKGVADAEKIGSQEEENGEAENWTIGGFIPSKTERANGLGDGGLKGNTTPPPPPPPPLPPSSQGSVGSQRSSSGISEFESQPMQVKGVNKCSEARSPASIQSLPGQSEQKPLISPGTPEKSGKVGGVVAENQPKKPTISSRGVSEMARKVMEDMPCVSTTGDGPNGKKVDGFLYRYKKGEEVRIVCVCHGTFLSPAEFVKHAGGSDVAHPLRHIVVYPSSLL* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23997437 24018763 - Vvi14g1029 Vvi14g1029 776096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1029 697 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Vvi14g1029 697 Gene3D - 265 397 IPR012677 -
Vvi14g1029 697 Pfam Tify domain binding domain 657 690 IPR032308 -
Vvi14g1029 697 Gene3D - 5 136 - -
Vvi14g1029 697 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 2 455 - -
Vvi14g1029 697 SUPERFAMILY NTF2-like 11 132 IPR032710 -
Vvi14g1029 697 MobiDBLite consensus disorder prediction 210 231 - -
Vvi14g1029 697 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Vvi14g1029 697 MobiDBLite consensus disorder prediction 538 562 - -
Vvi14g1029 697 SMART rrm1_1 303 375 IPR000504 GO:0003723
Vvi14g1029 697 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 379 IPR000504 GO:0003723
Vvi14g1029 697 MobiDBLite consensus disorder prediction 259 297 - -
Vvi14g1029 697 MobiDBLite consensus disorder prediction 522 537 - -
Vvi14g1029 697 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 2 455 IPR039539 -
Vvi14g1029 697 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 362 IPR000504 GO:0003723
Vvi14g1029 697 MobiDBLite consensus disorder prediction 421 618 - -
Vvi14g1029 697 SUPERFAMILY RNA-binding domain, RBD 290 409 IPR035979 GO:0003676
Vvi14g1029 697 MobiDBLite consensus disorder prediction 469 491 - -
Vvi14g1029 697 CDD NTF2 11 132 IPR018222 -
Vvi14g1029 697 CDD RRM_SF 304 362 - -
Vvi14g1029 697 MobiDBLite consensus disorder prediction 144 174 - -
Vvi14g1029 697 MobiDBLite consensus disorder prediction 200 233 - -
Vvi14g1029 697 MobiDBLite consensus disorder prediction 569 589 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g33 Vvi14g1029 ECH
Vvi14g1029 Vvi17g464 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1029 K24983 - vvi:100258271 760.37