Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1048 ATGGCTTCTTCACTCAAATGTTTGAGCTTCTATTTCCTTGTTCTAGTGCTGATCAGCTCCACCGCCATCCAAGGCCGCCCCTTCAATGGGTTGAAGAAGCCGCAGAGCCCCGCTGGTACGGGGGTCATGGGATTCTTTGATGGGTTGTCTCTTAGAACCATCAAGCAATCAAGGCCAAGCCCTGGAGAAGGAAACAAATTCACCAACGTGGTTCGAAGACTTGGAGGAGGAATCAATAAGCCAGGTCCCAGCCCTGGTCAGGGGCACGATTTGCCCACATGTATAATCTTTCTCCCCAACACACCCATGGCCGGCTCTCATTTTTTGCTTGGTGGGGCAATGTTCACAGCTCTCTTGCTCTTAGGCTTAGCCAGCAGTCAGACGGGATGGTATGATGCCCATGCAACGTTTTACGGTGACATGCAGGGCAACGAGACGATGCAAGGTGCTTGTGGATATGGTGATCTCTTCAAACAAGGATACGGACTGGAGACCACGGCCCTGAGCACAGCGCTCTTCGACAATGGCCTTAGCTGCGGAGCATGCTTTGAGATCAAGTGTGTGAACGACCCACAATGGTGTATACCCGACGCTGGCACCATTACAGTAACTGCAACCAACTTCTGCCCTCCTAATTACAGCAAGCCGACGGGAAACTGGTGCAACCCTCCTCTGCAACACTTCGACTTGTCCATGCCCATGTTCGTAAGGATTGCCAAATACAAGGCCGGGATCATTCCTGTGCAGTACCGTCGAGTTAGGTGCCATAAGAGAGGAGGGATCAAGTTTGAGATCAAGGGGAATCGGTATTGGGTACTTGTGTTGGTGTTCAATGTTGGGGGCGTTGGGGATGTTTCCAATGTCAAGATTAAGGGCTCCAACACCCAGTGGCTTCAAATGTCGCGCAACTGGGGACAGAATTGGGAGGTCGGGGTGGTGCTGGTGGGGCAAAGCTTGTCGTTCCAAGTGACCACAAGGGATCAGAAGATGGTTCAGTCCGATAATGTTGCACCAGCTGATTGGAAATTTGGTCAGACATTTGAAGGGAAATCAAACTTTTAG 1062 51.13 MASSLKCLSFYFLVLVLISSTAIQGRPFNGLKKPQSPAGTGVMGFFDGLSLRTIKQSRPSPGEGNKFTNVVRRLGGGINKPGPSPGQGHDLPTCIIFLPNTPMAGSHFLLGGAMFTALLLLGLASSQTGWYDAHATFYGDMQGNETMQGACGYGDLFKQGYGLETTALSTALFDNGLSCGACFEIKCVNDPQWCIPDAGTITVTATNFCPPNYSKPTGNWCNPPLQHFDLSMPMFVRIAKYKAGIIPVQYRRVRCHKRGGIKFEIKGNRYWVLVLVFNVGGVGDVSNVKIKGSNTQWLQMSRNWGQNWEVGVVLVGQSLSFQVTTRDQKMVQSDNVAPADWKFGQTFEGKSNF* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24335232 24340925 - Vvi14g1048 Vvi14g1048 776115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1048 353 SUPERFAMILY Barwin-like endoglucanases 119 278 IPR036908 -
Vvi14g1048 353 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 148 260 IPR007112 -
Vvi14g1048 353 SUPERFAMILY PHL pollen allergen 257 349 IPR036749 -
Vvi14g1048 353 Gene3D - 121 256 IPR036908 -
Vvi14g1048 353 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 270 349 IPR007117 -
Vvi14g1048 353 Gene3D - 259 353 IPR036749 -
Vvi14g1048 353 Pfam Expansin C-terminal domain 261 338 IPR007117 -
Vvi14g1048 353 SMART dpbb_1 165 250 IPR007112 -
Vvi14g1048 353 PRINTS Expansin/Lol pI family signature 129 144 IPR007118 GO:0005576
Vvi14g1048 353 PRINTS Expansin/Lol pI family signature 147 165 IPR007118 GO:0005576
Vvi14g1048 353 PRINTS Expansin/Lol pI family signature 169 187 IPR007118 GO:0005576
Vvi14g1048 353 PRINTS Expansin/Lol pI family signature 243 259 IPR007118 GO:0005576
Vvi14g1048 353 PRINTS Expansin/Lol pI family signature 297 311 IPR007118 GO:0005576
Vvi14g1048 353 PRINTS Expansin/Lol pI family signature 335 349 IPR007118 GO:0005576
Vvi14g1048 353 Pfam Lytic transglycolase 165 250 IPR009009 -
Vvi14g1048 353 PRINTS Expansin signature 160 174 IPR002963 GO:0009664
Vvi14g1048 353 PRINTS Expansin signature 187 198 IPR002963 GO:0009664
Vvi14g1048 353 PRINTS Expansin signature 201 211 IPR002963 GO:0009664
Vvi14g1048 353 PRINTS Expansin signature 218 235 IPR002963 GO:0009664
Vvi14g1048 353 PRINTS Expansin signature 235 248 IPR002963 GO:0009664
Vvi14g1048 353 PRINTS Expansin signature 259 271 IPR002963 GO:0009664
Vvi14g1048 353 PRINTS Expansin signature 271 292 IPR002963 GO:0009664
Vvi14g1048 353 PRINTS Expansin signature 306 327 IPR002963 GO:0009664
Vvi14g1048 353 PRINTS Expansin signature 335 351 IPR002963 GO:0009664
Vvi14g1048 353 PANTHER EXPANSIN-A15 118 351 IPR002963 GO:0009664
Vvi14g1048 353 PANTHER EXPANSIN 118 351 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1048 - - vvi:100261723 528.865