Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1069 ATGAATATCTGTGGCTACAAGAGAAAATTTGAGGCTATAGTCTCCCCAGCAGACACTACAAGCCAGCTTTCTCCATGCACTCCTGCACAGTGGCTCCAAACTGTCATTTGTTCACTTCCTGCAAAACCATCTGCAGAATTGGAGAGGTTCATGTCATCATGTGATGGGAATGTAACTGATAAGGTGATATGCAGGGCCAGCATAATATTGGCGGCCATATTTCCCAGGGGTTGTAATGGAAACCGATGTATGAGTTCTGGTTTGCATAATAGCAGCTTGATGAATAGTGGGTGGATAGAGCAGAGACAAGAGGAAGCTCTGAAATTATACTATAAGGTTTTGGAATCCATTTGTGAATCTGAAGCTCAAAAGCTGCAGGGAAGGAACTTGACCCAGCTGTTAACTAATGAGAGGTTCCACAGATGCATGCTAGCATGTTCAGCTGAACTGGTTTCAGCAGCTCATATGGGAGTTAGGATGCTGTTTCCTAGAGTATTGGAGAGAATTGGTATAACTGCATTTGATCTGAGCAGAGTGACTGAAAGTTTCATTAAACATGAAGGGTCACTTCCAAGAGAATTGAAGAGGTACCTGAATTCTATGGAAGAGCAAATGTTGGAGAGCATGGTATGGGGAAAAGGTTCCTCCTTATACAATTCTCTGATTGTTGCAAGACCATCCCTTGCTGAAGAAATACGTCGGCTCGGCCTACTCGCAAAGCCTATGCCATCACTGGATGCAATTGCTGCAGATAATCTTCTTTCATATGGAGGCTTGCCTCACCCACCTGGCCAGAATGGAAATGCTAGGTCTTCAGAGAAAGTATCCAGTGAACTACACAACTCCTCTGCATTACCAATGAAGGAACATTCACCTGCTCTTAATGATCAAAAGCCAAGGAAGCCACCACCATCACCCCCTCTGCTGTCTGCATTTGCCAGTCCAACACAGCCAAATCCAGGAGGCAGGGGCTCTACTTGCTTGGACACAGGGATTAAGCTGCTCTTTGAGAAGGTGGCAAAGTTAGCAGCAGTACGAATCAATCATCTGACTCTGAGGCTAAAACCGTTGCAGCCGATCAGAGAGATTGTCTATGGCTTATTTCATCGGATCCTAAATCAAAAAACTGCCCTTTGTTTCAACCGGCATGTTGACCAGATCATCCTCTGCTGTTTCTACATCATTGTAAAGGACTCTAAACTAGAACTGACCTTTAAGGAGATCAAAGACAGCTATGTGAAGCAACCACAACATGGACCTCAAGTGGTCAGCCATGTGTTTGTTAACAGGTCACCAGCACATGGGAATGGGAAAAACAGGGAGGATCACATTGATATTGTCGCATTTTACAATGAAATCTTCCTCTGGGCTGTAAAGCCTTTACTGGTTGAGGTTAGACCTGCCAAAGTGTCTGACCAAGCTCCTGATGAGGCTGCAAATAATGCTGATGATGAGTGTCCCGGTTCACCTCGGATTTCTCCGTTTCCAAGCATTCCTGATTTATCTCCGAAGAAAGTCTCTCCCTCGCACAATGTCTACCTATCCTCACTGCAACCATCAAAGAAGGAAGCATTGATCTCAAGGGGTGCTAAAAGCTATTATGCCTGTTTTGGGGAGAGCACTCGTGCTTACCAGAGCCCCTCCAAAGATCTCACTACAATTAACAACTGTTTGCGCAGCAGGCCAAAACTGAGACGCCGTCTGGATGTAGAGTTTGTTAGTCACTCTGAAGTGGCCAGGGCCCTCTTCCATCATCAATCAGCATGA 1767 45.33 MNICGYKRKFEAIVSPADTTSQLSPCTPAQWLQTVICSLPAKPSAELERFMSSCDGNVTDKVICRASIILAAIFPRGCNGNRCMSSGLHNSSLMNSGWIEQRQEEALKLYYKVLESICESEAQKLQGRNLTQLLTNERFHRCMLACSAELVSAAHMGVRMLFPRVLERIGITAFDLSRVTESFIKHEGSLPRELKRYLNSMEEQMLESMVWGKGSSLYNSLIVARPSLAEEIRRLGLLAKPMPSLDAIAADNLLSYGGLPHPPGQNGNARSSEKVSSELHNSSALPMKEHSPALNDQKPRKPPPSPPLLSAFASPTQPNPGGRGSTCLDTGIKLLFEKVAKLAAVRINHLTLRLKPLQPIREIVYGLFHRILNQKTALCFNRHVDQIILCCFYIIVKDSKLELTFKEIKDSYVKQPQHGPQVVSHVFVNRSPAHGNGKNREDHIDIVAFYNEIFLWAVKPLLVEVRPAKVSDQAPDEAANNADDECPGSPRISPFPSIPDLSPKKVSPSHNVYLSSLQPSKKEALISRGAKSYYACFGESTRAYQSPSKDLTTINNCLRSRPKLRRRLDVEFVSHSEVARALFHHQSA* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24612251 24616683 + Vvi14g1069 Vvi14g1069 776136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1069 588 MobiDBLite consensus disorder prediction 472 499 - -
Vvi14g1069 588 Pfam Retinoblastoma-associated protein B domain 332 459 IPR002719 GO:0005634|GO:0051726
Vvi14g1069 588 MobiDBLite consensus disorder prediction 297 313 - -
Vvi14g1069 588 SUPERFAMILY Cyclin-like 28 223 IPR036915 -
Vvi14g1069 588 Gene3D - 26 211 - -
Vvi14g1069 588 Gene3D - 267 498 - -
Vvi14g1069 588 SMART RB_A_2 27 221 IPR002720 GO:0005634|GO:0051726
Vvi14g1069 588 PANTHER BNACNNG22930D PROTEIN 24 580 - -
Vvi14g1069 588 SUPERFAMILY Cyclin-like 330 497 IPR036915 -
Vvi14g1069 588 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 24 580 IPR028309 GO:0006357|GO:0051726
Vvi14g1069 588 MobiDBLite consensus disorder prediction 259 324 - -
Vvi14g1069 588 MobiDBLite consensus disorder prediction 265 284 - -
Vvi14g1069 588 Pfam Retinoblastoma-associated protein A domain 26 221 IPR002720 GO:0005634|GO:0051726
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13939 PF01858 RB_A 1.30E-61 CL0065 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1069 K04681 - vvi:100261814 1150.19