Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g1103 | ATGGGTTTCACCGGTCTCAGTTCGCAAACTCAGATGGGAACTCCCGAGCTCAGCTCCAGTTCCGAGTTTCCGATTTCTCGTTTGTTGCCGGCGTCAGACAGTACTGGAAGCTTAGGCGCTGGTTTTACTCCGGCCGGCTTTGAGGGTTTCGATGGTTCTGGTAACTCCCTTTTCCTCAACAGGTCCAAGGTTTTGAGGCCGCTCGAAGTTTTCCCTCCAGTTGGCGCACAGCCAACTCTTTTTCAGAAGCGAGCAGCGCTTCGACAAAGCTCCAGCGCGAGCGATAAATTGGGGAATTTAGGGTTTTTGGGGAGCTTCGACGTCTCGGGTTTGAATTATGATTCTGATGAGCCCACCGTGGATGAGCTCGCCAAGAACGGTGGAAGTAACTCAAATGCGAATAGTACTGTGACTGGTGGAGATCAGAAAGGGAAGAAGAAGGGGCTTCCGGCCAAAAATCTTATGGCTGAGAGGCGGCGGAGGAAGAAGCTTAATGACAGGCTCTACATGCTTAGGTCTGTCGTGCCCAAGATCAGCAAGATGGATAGAGCTTCTATCCTTGGGGATGCCATTGAGTACTTGAAGGAGCTTTTGCAAAGGATCAATGATCTCCATAATGAACTGGAATCAACCCCATCTGGCTCTTTGCTGGCGCCGGCTTCTACAAGCTTCCATCCTTTGACACCCACACCCCCTACTCTTCCCTGCCGTGTCAAAGAAGAGCTATGCCCTAGCTCATTGCCAAGCCCTAAAAGTCAACCAGCAAGGGTGGAGGTAAGGGTAAGAGAAGGAAGGGCTGTAAACATTCATATGTTTTGTGCCCGCAGACCAGGTCTCCTGCTCTCCACAATGAGGGCTCTGGACAACCTTGGATTGGACATCCAGCAGGCTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAGCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTCTGGATTCGGCAGGCTTCCACGGTATGCTGTAG | 1023 | 51.12 | MGFTGLSSQTQMGTPELSSSSEFPISRLLPASDSTGSLGAGFTPAGFEGFDGSGNSLFLNRSKVLRPLEVFPPVGAQPTLFQKRAALRQSSSASDKLGNLGFLGSFDVSGLNYDSDEPTVDELAKNGGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPSGSLLAPASTSFHPLTPTPPTLPCRVKEELCPSSLPSPKSQPARVEVRVREGRAVNIHMFCARRPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGFHGML* | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 24969751 | 24974529 | - | Vvi14g1103 | Vvi14g1103 | 776170 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g1103 | 340 | CDD | bHLH_AtAMS_like | 151 | 215 | - | - | |
Vvi14g1103 | 340 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 148 | 197 | IPR011598 | GO:0046983 | |
Vvi14g1103 | 340 | Gene3D | - | 142 | 212 | IPR036638 | GO:0046983 | |
Vvi14g1103 | 340 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 151 | 216 | IPR036638 | GO:0046983 | |
Vvi14g1103 | 340 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vvi14g1103 | 340 | CDD | ACT_UUR-ACR-like | 269 | 329 | - | - | |
Vvi14g1103 | 340 | MobiDBLite | consensus disorder prediction | 117 | 154 | - | - | |
Vvi14g1103 | 340 | PANTHER | BHLH TRANSCRIPTIONAL FACTOR | 2 | 93 | - | - | |
Vvi14g1103 | 340 | PANTHER | BHLH TRANSCRIPTIONAL FACTOR | 105 | 339 | - | - | |
Vvi14g1103 | 340 | MobiDBLite | consensus disorder prediction | 124 | 141 | - | - | |
Vvi14g1103 | 340 | SMART | finulus | 154 | 203 | IPR011598 | GO:0046983 | |
Vvi14g1103 | 340 | Coils | Coil | 187 | 211 | - | - | |
Vvi14g1103 | 340 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 2 | 93 | - | - | |
Vvi14g1103 | 340 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 105 | 339 | - | - | |
Vvi14g1103 | 340 | Pfam | Helix-loop-helix DNA-binding domain | 155 | 197 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi14g1103 | Vvi17g28 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13944 | PF00010 | HLH | 1.10E-09 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g1103 | - | - | vvi:100265294 | 621.698 |