Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1103 ATGGGTTTCACCGGTCTCAGTTCGCAAACTCAGATGGGAACTCCCGAGCTCAGCTCCAGTTCCGAGTTTCCGATTTCTCGTTTGTTGCCGGCGTCAGACAGTACTGGAAGCTTAGGCGCTGGTTTTACTCCGGCCGGCTTTGAGGGTTTCGATGGTTCTGGTAACTCCCTTTTCCTCAACAGGTCCAAGGTTTTGAGGCCGCTCGAAGTTTTCCCTCCAGTTGGCGCACAGCCAACTCTTTTTCAGAAGCGAGCAGCGCTTCGACAAAGCTCCAGCGCGAGCGATAAATTGGGGAATTTAGGGTTTTTGGGGAGCTTCGACGTCTCGGGTTTGAATTATGATTCTGATGAGCCCACCGTGGATGAGCTCGCCAAGAACGGTGGAAGTAACTCAAATGCGAATAGTACTGTGACTGGTGGAGATCAGAAAGGGAAGAAGAAGGGGCTTCCGGCCAAAAATCTTATGGCTGAGAGGCGGCGGAGGAAGAAGCTTAATGACAGGCTCTACATGCTTAGGTCTGTCGTGCCCAAGATCAGCAAGATGGATAGAGCTTCTATCCTTGGGGATGCCATTGAGTACTTGAAGGAGCTTTTGCAAAGGATCAATGATCTCCATAATGAACTGGAATCAACCCCATCTGGCTCTTTGCTGGCGCCGGCTTCTACAAGCTTCCATCCTTTGACACCCACACCCCCTACTCTTCCCTGCCGTGTCAAAGAAGAGCTATGCCCTAGCTCATTGCCAAGCCCTAAAAGTCAACCAGCAAGGGTGGAGGTAAGGGTAAGAGAAGGAAGGGCTGTAAACATTCATATGTTTTGTGCCCGCAGACCAGGTCTCCTGCTCTCCACAATGAGGGCTCTGGACAACCTTGGATTGGACATCCAGCAGGCTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAGCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTCTGGATTCGGCAGGCTTCCACGGTATGCTGTAG 1023 51.12 MGFTGLSSQTQMGTPELSSSSEFPISRLLPASDSTGSLGAGFTPAGFEGFDGSGNSLFLNRSKVLRPLEVFPPVGAQPTLFQKRAALRQSSSASDKLGNLGFLGSFDVSGLNYDSDEPTVDELAKNGGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPSGSLLAPASTSFHPLTPTPPTLPCRVKEELCPSSLPSPKSQPARVEVRVREGRAVNIHMFCARRPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGFHGML* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24969751 24974529 - Vvi14g1103 Vvi14g1103 776170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1103 340 CDD bHLH_AtAMS_like 151 215 - -
Vvi14g1103 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Vvi14g1103 340 Gene3D - 142 212 IPR036638 GO:0046983
Vvi14g1103 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 216 IPR036638 GO:0046983
Vvi14g1103 340 MobiDBLite consensus disorder prediction 1 23 - -
Vvi14g1103 340 CDD ACT_UUR-ACR-like 269 329 - -
Vvi14g1103 340 MobiDBLite consensus disorder prediction 117 154 - -
Vvi14g1103 340 PANTHER BHLH TRANSCRIPTIONAL FACTOR 2 93 - -
Vvi14g1103 340 PANTHER BHLH TRANSCRIPTIONAL FACTOR 105 339 - -
Vvi14g1103 340 MobiDBLite consensus disorder prediction 124 141 - -
Vvi14g1103 340 SMART finulus 154 203 IPR011598 GO:0046983
Vvi14g1103 340 Coils Coil 187 211 - -
Vvi14g1103 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 93 - -
Vvi14g1103 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 105 339 - -
Vvi14g1103 340 Pfam Helix-loop-helix DNA-binding domain 155 197 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1103 Vvi17g28 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13944 PF00010 HLH 1.10E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1103 - - vvi:100265294 621.698