Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1110 ATGATGGAGCAAAACGAGGCGTATGCTTTAATGGCAGGTGTTGGGGGTGAGCTTAGCTTTGTCACAGTGAGAGGGGACAAGACTCATGAGGGGTCGGATCGGAGTCCACCCACTCGTGACCTCGTTGCCGCTTCCAGTTTCGGTGTCCAAGGGAGGAAAAGGATGCCCAGACAGAGGCGATCATCCGCCATCAACCTTCTCACTTTTGCTCCTTCCACCTCCCCGCACGTGCCTCCCCCTCCCCCCGCACGTGCAATTGATCGAAAGTGGCTAAGATTTCTTTTCGAGAAAGAACTCAAGAACAGCGATGTAGGCTCCCTTAGGAGAATGGTACTCCCGAAGAAATCGGCTGAGACTCACCTCCCTCTCCTTGAGGCAAAGGAAGGGATTCTCATCACCATGTATGATTTGGATGGCCAGCATGTTTGGAACTTCAAGTACAGGTTTTGGCCCAATAATAATAGCCGAATGTATGTGCTTGAGAACACCGGGGAATTTGTTAATGTTCATGGACTACAGCTTGGAGACTACATTATGCTTTACCATGATGGTCAAACTCAGAGCTTAGTCATTGAGGCTAGGAAGGCTTCTGAAAAAAATCTGCACGCTGATCTAAGTAAGAATATCGCTGTCAGTGACCTCTTTCTTCAAGATCTGGAGGCCAATCGATCAAATTATTTTCTGGCAATGGACACAGGCACATCGTTTGTGTATGAGACCACCTTCTCGAATGATTCTCCGCTTGACTTTTTGGGTGGCTCGATGACCAACTATCCTGGTGGATCAGTGAGCAACTATTCAAGATTTGGAGCACTGGAAGGCTTTGGATCTGTAGAGAGCTTGTCACTCGATGATTTCTGTTGA 864 48.15 MMEQNEAYALMAGVGGELSFVTVRGDKTHEGSDRSPPTRDLVAASSFGVQGRKRMPRQRRSSAINLLTFAPSTSPHVPPPPPARAIDRKWLRFLFEKELKNSDVGSLRRMVLPKKSAETHLPLLEAKEGILITMYDLDGQHVWNFKYRFWPNNNSRMYVLENTGEFVNVHGLQLGDYIMLYHDGQTQSLVIEARKASEKNLHADLSKNIAVSDLFLQDLEANRSNYFLAMDTGTSFVYETTFSNDSPLDFLGGSMTNYPGGSVSNYSRFGALEGFGSVESLSLDDFC* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 25028975 25030714 - Vvi14g1110 Vvi14g1110 776177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1110 287 Pfam B3 DNA binding domain 95 195 IPR003340 GO:0003677
Vvi14g1110 287 CDD B3_DNA 93 195 IPR003340 GO:0003677
Vvi14g1110 287 ProSiteProfiles B3 DNA-binding domain profile. 95 197 IPR003340 GO:0003677
Vvi14g1110 287 Gene3D - 91 209 IPR015300 -
Vvi14g1110 287 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 30 286 - -
Vvi14g1110 287 SUPERFAMILY DNA-binding pseudobarrel domain 93 192 IPR015300 -
Vvi14g1110 287 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 286 IPR044800 GO:0003700
Vvi14g1110 287 SMART B3_2 95 197 IPR003340 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13945 PF02362 B3 5.60E-18 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1110 - - vvi:100244687 569.696