Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1150 ATGGGGAGAGGAAAGTTCCAGCTGAAACGAATCGAGAACAAGAACAATCGGCAGGTGACTTTCTCAAAGCGACGAAGCGGAATGATGAAGAAAGCTCACGAACTATCTATTCTATGTGACGTTGATCTTGCTCTGATCATCTTCTCCGCCAGAGGCAGGCTTTACGAATTCTGTAGTGGCAATAGCTTGAGAAACATTATCGAGTCTTACCTACAGATAAGTCGTGATGCAGAAGCAAATGTTGGCAGCAGCTCTCATGAAGCCAAGCAGAAGCGTTATCCAGTTCGATGGGCAGGTGCTGACCTACTTAAAATAGTTGAAAGTCAGGTTGAAGGGCCACGCATCGAGCAACTAAGGTTGTCAGAGCTCAGCCAACTAGAGCAAAAACTGGATGGCATGCTGAGACAAACTAGGCGACGGAAGACACAGCTGATGATGGAAGCCATAGCATGCCTCAAAGAAAAGGTAAAGGAGCTGAACGAACAAAAACAGCAAATGGAGAAGATGATTGCAGCAGCAGAGAGTAAAGACGCCCTCCAGCATGAGGACCTGGTGATGGAACAAGCCGGTAACAACAGCAAGCCCCCTCCCCAGAATGTTGTGCTGCAGTTGCTTTGA 618 47.57 MGRGKFQLKRIENKNNRQVTFSKRRSGMMKKAHELSILCDVDLALIIFSARGRLYEFCSGNSLRNIIESYLQISRDAEANVGSSSHEAKQKRYPVRWAGADLLKIVESQVEGPRIEQLRLSELSQLEQKLDGMLRQTRRRKTQLMMEAIACLKEKVKELNEQKQQMEKMIAAAESKDALQHEDLVMEQAGNNSKPPPQNVVLQLL* 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 25509954 25536232 + Vvi14g1150 Vvi14g1150 776217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1150 205 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Vvi14g1150 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi14g1150 205 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Vvi14g1150 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi14g1150 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi14g1150 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi14g1150 205 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi14g1150 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi14g1150 205 Coils Coil 142 176 - -
Vvi14g1150 205 Pfam K-box region 108 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi14g1150 205 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi14g1150 205 PANTHER PROTEIN, PUTATIVE-RELATED 1 204 - -
Vvi14g1150 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi14g1150 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi14g1150 205 PANTHER MADS BOX PROTEIN 1 204 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1272 Vvi14g1150 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13951 PF01486 K-box 8.00E-11 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1150 K09264 - vvi:100241171 392.504