Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1179 ATGGAGGAAGATCCAAGCCAGGTTGCAGAAACAACAACCACCACCACCTCAAGCGTGGAGGGAGTAGGAGAGGGGGAAGAGAGGGACCTGGAAAGCAATCCACTGAACCAGCCACTGCTGAAGAGAAGCCGAACACTCTCCTCCAATCCTCTGGCCATAGTTGGGGCCAAGGTCTCTCATATAGAGAGCTTGGACTATGAGATCAATGAGAATGACCTCTTCAAGCATGATTGGAGAAGCAGATCATCAGCCCAAGTACTGCAGTACATATTCTTGAAATGGTCGCTGGCATTCCTTGTTGGGCTGCTCACTGGCCTGATTGCCACCCTCATCAATCTTGCTGTAGAGAATATTGCCGGTTACAAGCTTCTAGCTGTGTCTGGCTTAGTAGAGAAGAAAAGGTATTTGACAGGATTCATTTATTTGACAACGGCCAATTTCGTATTGACTTTGTTTGCTGCTTTCCTGTGTGTGTGCTTTGCACCTACTGCGGCTGGGCCTGGTATACCAGAGATCAAAGCTTATCTCAATGGAGTAGATACTCCCAACATGTTTGGTGCCTCCACATTGATTGTCAAGATATTTGGAAGCATAGGAGCTGTTTCTGCAGGCCTAGATCTGGGGAAAGAAGGGCCTCTAGTGCATATTGGTAGCTGCATTGCTTCCCTACTAGGCCAGGGTGGACCTGAAAATTATCGTATAAAATGGCGCTGGCTCCGCTACTTTAACAATGACCGTGACAGACGTGATCTCATCACATGTGGGGCTTCTTCAGGGGTTTGTGCAGCTTTCCGGGCTCCAGTTGGTGGTGTCCTGTTTTCTCTGGAAGAAGTGGCTACATGGTGGAGGAGTGCCCTCCTCTGGAGAACTTTCTTCAGCACAGCGGTTGTGGCCGTGGTACTTAGAGCTTTCATTGAATATTGTAATTCTGGGAAATGCGGGCTTTTCGGGAGAGGAGGACTCATCATGTTTGATGTGAGCGATGTTACTGTGACATACCATGCCATGGATATCGCCCCTGTTGCATTAATTGGATTAATTGGTGGTGTGTTGGGAAGCCTTTACAATCACCTTCTCCACAAGGTCCTGAGGGTCTACAATCTCATTAATCAGAAGGGAAAAATACATAAGCTTCTTCTGAGTCTGAGTGTCTCACTATTCACCTCAATTTGCTTGTATTGCTTGCCTTTCCTTGCCACTTGCTCACCTTGTGATTCCTCAATCACTGAGACTTGCCCCACCAATGGACGGACTGGCAACTTCAAGCAATTCAACTGCCCCGATGGCTACTACAATGACCTAGCCAGTCTCCTCTTCACCACCAATGATGATGCGGTTCGAAACATCTTCTCTACTAACACTGCAACAGAGTTCCACCCCCTTTCCCTCTTAATATTCTTCGGACTCTATTATATTCTGGGCCTGATTACCTTTGGTATTGCTGTACCATCTGGCCTCTTCCTCCCCATCATCTTAATGGGTTCAGCTTATGGCCGCTTGCTTGGCATTGCCATGGGCTCCTACACAAAAATTGACCAAGGGCTTTATGCTGTTCTTGGTGCAGCCTCCCTGATGGCTGGTTCAATGAGGATGACGGTTTCCCTCTGTGTCATATTCCTTGAACTCACAAACAATCTGCTCTTACTACCCATAACAATGATTGTCCTCCTAATAGCCAAAAGTGTTGGTGATTGCATCAACCCAAGCATTTATGACATAATACTGCACCTCAAAGGCCTGCCTTTCTTGGATGCGAATCCTGAGCCATGGATGAGAAATTTAACTGTTGGGGAGCTTGCAGATGCCAAGCCACCAGTAGTTACCCTTCGTGGAGTGGAAAAGGTAGCCCGCATTGTAGATGTCCTGAGAAATACCACGCACAATGGTTTCCCAGTGGTAGATGAAGGGGTGGTACCGCGGGTTGGCCTGGCCATAGGGGCAACTGAACTGCATGGAATTGTACTAAGAGCACACCTTGTTAAAGTGCTGAAGAAGAAGTGGTTCCTGCAAGAGAGAAGGAGAACAGAGGAGTGGGAAGTGAGAGAGAAATTCACCTGGATTGAACTGGCCGAGAGGGAGGGAAAGTTTGAGGAAGTGGCTGTGACAAATGATGAAATGGAAATGTACGTTGATTTGCATCCTCTGACCAACACAACCCCTTATACAGTGGTGGAAAGCATGTCAGTGGCAAAAGCAATGGTGCTCTTCAGGCAGGTGGGACTCCGGCATATGCTTATTGTACCCAAGTATCAAGCAGCTGGGGTGTCTCCAGTAGTTGGGATCTTGACCAGGCAGGATTTGAGAGCCTACAACATTTTGACAGCCTTTCCCCATCTAGCAAAATCCAAGGAAAGGGAAAAGGGGAACTGA 2370 47.68 MEEDPSQVAETTTTTTSSVEGVGEGEERDLESNPLNQPLLKRSRTLSSNPLAIVGAKVSHIESLDYEINENDLFKHDWRSRSSAQVLQYIFLKWSLAFLVGLLTGLIATLINLAVENIAGYKLLAVSGLVEKKRYLTGFIYLTTANFVLTLFAAFLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGASTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPENYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRAFIEYCNSGKCGLFGRGGLIMFDVSDVTVTYHAMDIAPVALIGLIGGVLGSLYNHLLHKVLRVYNLINQKGKIHKLLLSLSVSLFTSICLYCLPFLATCSPCDSSITETCPTNGRTGNFKQFNCPDGYYNDLASLLFTTNDDAVRNIFSTNTATEFHPLSLLIFFGLYYILGLITFGIAVPSGLFLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKSVGDCINPSIYDIILHLKGLPFLDANPEPWMRNLTVGELADAKPPVVTLRGVEKVARIVDVLRNTTHNGFPVVDEGVVPRVGLAIGATELHGIVLRAHLVKVLKKKWFLQERRRTEEWEVREKFTWIELAEREGKFEEVAVTNDEMEMYVDLHPLTNTTPYTVVESMSVAKAMVLFRQVGLRHMLIVPKYQAAGVSPVVGILTRQDLRAYNILTAFPHLAKSKEREKGN* 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 25779087 25784003 + Vvi14g1179 Vvi14g1179 776246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1179 789 Pfam Voltage gated chloride channel 150 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1179 789 CDD ClC_6_like 62 583 - -
Vvi14g1179 789 ProSiteProfiles CBS domain profile. 716 782 IPR000644 -
Vvi14g1179 789 SUPERFAMILY CBS-domain pair 587 769 IPR046342 -
Vvi14g1179 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC-A 28 784 - -
Vvi14g1179 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 28 784 - -
Vvi14g1179 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 770 - -
Vvi14g1179 789 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1179 789 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1179 789 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1179 789 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1179 789 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1179 789 MobiDBLite consensus disorder prediction 1 36 - -
Vvi14g1179 789 MobiDBLite consensus disorder prediction 7 21 - -
Vvi14g1179 789 Gene3D - 586 778 IPR046342 -
Vvi14g1179 789 Pfam CBS domain 718 769 IPR000644 -
Vvi14g1179 789 SUPERFAMILY Clc chloride channel 71 585 IPR014743 -
Vvi14g1179 789 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1179 789 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1179 789 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1179 789 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1179 789 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1179 789 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1179 789 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1179 789 SMART cbs_1 605 664 IPR000644 -
Vvi14g1179 789 SMART cbs_1 719 772 IPR000644 -
Vvi14g1179 789 Gene3D Clc chloride channel 85 585 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1179 K05016 - vvi:100260066 1520.37