Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1252 ATGGCCACCTTTGCAATGTCTCTTCTCTTCTTGTTCTCTCTTCTTCCTCCAATTCTTGGTTCCTCCGCACCAGTCCAAGACCCTGAAGTAGTTGTGCAAGAGGTGCACAGGAGCATCAATGCCTCTAGGAGGAACTTGGGCTATTTCTCTTGTGGAACAGGCAACCCTATCGACGATTGCTGGAGGTGCGACGCCAACTGGGACAAGAACCGCCAGCGGTTAGCCGACTGCGCTATTGGGTTTGGCAAGGATGCAATGGGCGGAAAGAATGGTAGAATTTACGTGGTCACCGACTCCGAGGACGATGACCCTGTCAATCCAAGGCCAGGGACTCTCCGGCATGCTGTGATCCAAGATGAGCCATTGTGGATCATCTTCAAGCGTGACATGGTCATCAAGCTGAAGCAAGAGCTGGTGATGAACTCGTTCAAGACCATTGATGGTAGGGGTGCTAGCGTTCACATTGCTGGAGGGCCATGCATTACCATCCATTACGCCAGTAACATCATCATACATGGTCTCCATATCCATGACTGTAAGCAAGGAGGGAATGCCAACATCAGAAACTCTCCTCACCACTCCGGCTGGTGGACAGTATCTGATGGTGATGGGGTGTCCATCTTCGGTGGGAGGCATATATGGGTTGACCATTGCTCTTTGTCCAACTGCCATGACGGCCTCATTGATGCCATCCATGGATCCACCGCCATAACCATCTCTAACAATTTCATGACTCACCATGACAAGGTCATGCTCCTGGGCCACAGCGATTCTTATACAGAAGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTCGGAGAGGGGCTCGTGCAGAGAATGCCCAGATGTAGGCATGGGTATTTTCATGTGGTGAACAACGACTACACCCACTGGGAAATGTATGCCATTGGTGGAAGTGCTGACCCTACCATCAACAGCCAGGGCAACAGATTCCTAGCACCCAATGATAGATTTAAGAAAGCTGTGACAAAGCATGAGGATGCACCAGAAAGTGAAGCTTCCAGCTTGAGTGCCAGACCATCTTCTCTGGTGGGTTCAATCACCTTGGGTTCTGGCGCACTCGGCTGCAGGAAGGGGTCTCGTTGCTAA 1116 50.81 MATFAMSLLFLFSLLPPILGSSAPVQDPEVVVQEVHRSINASRRNLGYFSCGTGNPIDDCWRCDANWDKNRQRLADCAIGFGKDAMGGKNGRIYVVTDSEDDDPVNPRPGTLRHAVIQDEPLWIIFKRDMVIKLKQELVMNSFKTIDGRGASVHIAGGPCITIHYASNIIIHGLHIHDCKQGGNANIRNSPHHSGWWTVSDGDGVSIFGGRHIWVDHCSLSNCHDGLIDAIHGSTAITISNNFMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLAPNDRFKKAVTKHEDAPESEASSLSARPSSLVGSITLGSGALGCRKGSRC* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 26481800 26483502 + Vvi14g1252 Vvi14g1252 776319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1252 371 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Vvi14g1252 371 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vvi14g1252 371 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vvi14g1252 371 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vvi14g1252 371 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vvi14g1252 371 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vvi14g1252 371 PANTHER PECTATE LYASE 18-RELATED 7 341 IPR045032 GO:0030570
Vvi14g1252 371 PANTHER PECTATE LYASE 18-RELATED 341 368 IPR045032 GO:0030570
Vvi14g1252 371 SMART amb_all 129 326 IPR002022 -
Vvi14g1252 371 Pfam Pectate lyase 135 320 IPR002022 -
Vvi14g1252 371 SUPERFAMILY Pectin lyase-like 39 333 IPR011050 -
Vvi14g1252 371 Gene3D - 54 364 IPR012334 -
Vvi14g1252 371 PANTHER PECTATE LYASE 341 368 - -
Vvi14g1252 371 PANTHER PECTATE LYASE 7 341 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g591 Vvi14g1252 ECH
Vvi14g1252 Vvi17g877 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1252 K01728 - vvi:100233090 717.998