Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1310 ATGGCTGGATTAGAGGAATTGAAAAAGAAACTTTCACCATTGTTTGATCCCGATAAAGGCTTATCAGCTGGATCAACTTTGGACCCTTGTGATTCTTATATGCTGTCGGATGGTGGAACAGTTAACTTATTGAGCAAATCATGTGGAGTATACAATATAAATGAGCTCGGGTTGCTAAAGTGCTCATCTTCTCCAGTAGATGAAGCAGATTATAAAGAAAGGACTTATCGGTGTGCTTCCCATGAGATGAGGATTTTTGGAGCCATAGGTAGTGGTGCAAGCAGTGTTGTGCAGAGAGCTATCCATATACCCACTCATAGAATTATTGCGTTGAAGAAGATTAATATTTTTGAAAAGGAGAAAAGGCAACAGCTTCTCACTGAGATAAGGATGCTGTGTGAGGCACCTTGTTATGAGGGCCTTGTGGAGTTTCATGGGGCATTTTATACTCCAGACTCTGGACAGATAAGTATAGCTTTAGAGTACATGGATGGAGGGTCCTTGGCAGATGTCATACGGGTGCAGAAATGTATACCAGAACCAGTTCTTTCATCTATGGTTCGAAAGCTACTACATGGACTATGCTACTTGCATGGAGTTCGACATTTAGTTCATAGAGACATAAAGCCAGCAAATTTGCTAGTAAATCTTAAGGGGGAGCCAAAGATAACAGATTTTGGTATAAGTGCTGGCTTAGAGAATTCTGTGGCAATGTGTGCTACTTTTGTTGGAACTGTTACATATATGTCACCTGAGCGAATTCGGAATGAGAACTATTCTTATCCAGCTGATATTTGGAGCCTTGGTCTTGCACTCTTTGAATGTGGTACAGGGGAATTCCCATATACAGCTAATGAAGGACCTGTTAATCTTATGTTGCAGATACTGGATGATCCATCACCATCTCCACCAAAACACATATTTTCAGCTGAGTTCTGCTCATTTATTGATGCTTGCCTTCAGAAGGATGCAGATGCAAGGCCGACAGCAGAGCAGCTTCTTTCCCACCCATTTATTACAAAGTATGAGCATGCCAGAGTAGATTTAACGGCATTTGTCCGAAGCATTTTTGACCCAACACAAAAGATGAAGGATCTGGCAGATATGCTGATGATACACTATTACTTACTTTTTGATGGGCCTGATGACCTTTGGCAACATACAAAGACCTTATATAAGAAAGATTCAACTTTCAGTTTCTCGGGTAAACAATCTGTTGGTTCAGATGATATTTTTGCTACTTTGTCGGGCATTCGAAGTACATTAGTGGGTGACTGGCCTCCTGAACGACTTGTGCATGTTGTGGAAAAACTTCAGTGCCGTGGTCATGGACAAGATGGAGTTGCCATTCGTGTATCAGGATCCTTTATTGTTGGGAATCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAAGGTTTGCCTAGTTTTAAAGATCTTTCAATCGAAATTTCTAGCAATCGGATGGGAACATTTCAGGAGCAGTTTATCATGGAACCGGGAGATGCCATTGGCCGCTACTTCATAACCAAACAAGATCTCTACATCATCCAATAG 1557 41.3 MAGLEELKKKLSPLFDPDKGLSAGSTLDPCDSYMLSDGGTVNLLSKSCGVYNINELGLLKCSSSPVDEADYKERTYRCASHEMRIFGAIGSGASSVVQRAIHIPTHRIIALKKINIFEKEKRQQLLTEIRMLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVIRVQKCIPEPVLSSMVRKLLHGLCYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNENYSYPADIWSLGLALFECGTGEFPYTANEGPVNLMLQILDDPSPSPPKHIFSAEFCSFIDACLQKDADARPTAEQLLSHPFITKYEHARVDLTAFVRSIFDPTQKMKDLADMLMIHYYLLFDGPDDLWQHTKTLYKKDSTFSFSGKQSVGSDDIFATLSGIRSTLVGDWPPERLVHVVEKLQCRGHGQDGVAIRVSGSFIVGNQFLICGDGVQVEGLPSFKDLSIEISSNRMGTFQEQFIMEPGDAIGRYFITKQDLYIIQ* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 27139002 27145873 - Vvi14g1310 Vvi14g1310 776377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1310 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1310 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Vvi14g1310 518 CDD PKc_MAPKK_plant_like 84 343 - -
Vvi14g1310 518 Gene3D - 361 517 - -
Vvi14g1310 518 Gene3D Transferase(Phosphotransferase) domain 1 159 360 - -
Vvi14g1310 518 Gene3D Phosphorylase Kinase; domain 1 76 158 - -
Vvi14g1310 518 SUPERFAMILY Protein kinase-like (PK-like) 85 361 IPR011009 -
Vvi14g1310 518 PANTHER - 2 517 - -
Vvi14g1310 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Vvi14g1310 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1310 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Vvi14g1310 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1310 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Vvi14g1310 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76197 PF00069 Pkinase 1.10E-58 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1310 K20607 - vvi:100257776 1052.35