Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1310 ATGGCTGGATTAGAGGAATTGAAAAAGAAACTTTCACCATTGTTTGATCCCGATAAAGGCTTATCAGCTGGATCAACTTTGGACCCTTGTGATTCTTATATGCTGTCGGATGGTGGAACAGTTAACTTATTGAGCAAATCATGTGGAGTATACAATATAAATGAGCTCGGGTTGCTAAAGTGCTCATCTTCTCCAGTAGATGAAGCAGATTATAAAGAAAGGACTTATCGGTGTGCTTCCCATGAGATGAGGATTTTTGGAGCCATAGGTAGTGGTGCAAGCAGTGTTGTGCAGAGAGCTATCCATATACCCACTCATAGAATTATTGCGTTGAAGAAGATTAATATTTTTGAAAAGGAGAAAAGGCAACAGCTTCTCACTGAGATAAGGATGCTGTGTGAGGCACCTTGTTATGAGGGCCTTGTGGAGTTTCATGGGGCATTTTATACTCCAGACTCTGGACAGATAAGTATAGCTTTAGAGTACATGGATGGAGGGTCCTTGGCAGATGTCATACGGGTGCAGAAATGTATACCAGAACCAGTTCTTTCATCTATGGTTCGAAAGCTACTACATGGACTATGCTACTTGCATGGAGTTCGACATTTAGTTCATAGAGACATAAAGCCAGCAAATTTGCTAGTAAATCTTAAGGGGGAGCCAAAGATAACAGATTTTGGTATAAGTGCTGGCTTAGAGAATTCTGTGGCAATGTGTGCTACTTTTGTTGGAACTGTTACATATATGTCACCTGAGCGAATTCGGAATGAGAACTATTCTTATCCAGCTGATATTTGGAGCCTTGGTCTTGCACTCTTTGAATGTGGTACAGGGGAATTCCCATATACAGCTAATGAAGGACCTGTTAATCTTATGTTGCAGATACTGGATGATCCATCACCATCTCCACCAAAACACATATTTTCAGCTGAGTTCTGCTCATTTATTGATGCTTGCCTTCAGAAGGATGCAGATGCAAGGCCGACAGCAGAGCAGCTTCTTTCCCACCCATTTATTACAAAGTATGAGCATGCCAGAGTAGATTTAACGGCATTTGTCCGAAGCATTTTTGACCCAACACAAAAGATGAAGGATCTGGCAGATATGCTGATGATACACTATTACTTACTTTTTGATGGGCCTGATGACCTTTGGCAACATACAAAGACCTTATATAAGAAAGATTCAACTTTCAGTTTCTCGGGTAAACAATCTGTTGGTTCAGATGATATTTTTGCTACTTTGTCGGGCATTCGAAGTACATTAGTGGGTGACTGGCCTCCTGAACGACTTGTGCATGTTGTGGAAAAACTTCAGTGCCGTGGTCATGGACAAGATGGAGTTGCCATTCGTGTATCAGGATCCTTTATTGTTGGGAATCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAAGGTTTGCCTAGTTTTAAAGATCTTTCAATCGAAATTTCTAGCAATCGGATGGGAACATTTCAGGAGCAGTTTATCATGGAACCGGGAGATGCCATTGGCCGCTACTTCATAACCAAACAAGATCTCTACATCATCCAATAG 1557 41.3 MAGLEELKKKLSPLFDPDKGLSAGSTLDPCDSYMLSDGGTVNLLSKSCGVYNINELGLLKCSSSPVDEADYKERTYRCASHEMRIFGAIGSGASSVVQRAIHIPTHRIIALKKINIFEKEKRQQLLTEIRMLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVIRVQKCIPEPVLSSMVRKLLHGLCYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNENYSYPADIWSLGLALFECGTGEFPYTANEGPVNLMLQILDDPSPSPPKHIFSAEFCSFIDACLQKDADARPTAEQLLSHPFITKYEHARVDLTAFVRSIFDPTQKMKDLADMLMIHYYLLFDGPDDLWQHTKTLYKKDSTFSFSGKQSVGSDDIFATLSGIRSTLVGDWPPERLVHVVEKLQCRGHGQDGVAIRVSGSFIVGNQFLICGDGVQVEGLPSFKDLSIEISSNRMGTFQEQFIMEPGDAIGRYFITKQDLYIIQ* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 27139002 27145873 - Vvi14g1310 Vvi14g1310 776377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1310 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1310 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Vvi14g1310 518 CDD PKc_MAPKK_plant_like 84 343 - -
Vvi14g1310 518 Gene3D - 361 517 - -
Vvi14g1310 518 Gene3D Transferase(Phosphotransferase) domain 1 159 360 - -
Vvi14g1310 518 Gene3D Phosphorylase Kinase; domain 1 76 158 - -
Vvi14g1310 518 SUPERFAMILY Protein kinase-like (PK-like) 85 361 IPR011009 -
Vvi14g1310 518 PANTHER - 2 517 - -
Vvi14g1310 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Vvi14g1310 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1310 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Vvi14g1310 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1310 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Vvi14g1310 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1310 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - vvi:100257776 1052.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi11g140 . 27 352 MAP Kinase Kinase Gene Family AT4G26070 69.9 2.1e-134 475.7
Vvi11g254 . 26 350 MAP Kinase Kinase Gene Family AT4G26070 57.0 7.7e-108 387.5
Vvi11g140 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 71.3 1.6e-134 476.1
Vvi11g254 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 3.2e-106 382.1
Vvi14g1310 . 35 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.3e-228 789.3
Vvi9g955 . 91 343 MAP Kinase Kinase Gene Family AT1G51660 53.7 6.8e-86 314.7
Vvi9g955 . 136 335 MAP Kinase Kinase Gene Family AT3G21220 78.0 7.6e-87 317.8
Vvi11g254 . 1 355 MAP Kinase Kinase Gene Family AT5G56580 83.1 3.7e-169 591.3
Vvi11g140 . 7 351 MAP Kinase Kinase Gene Family AT5G56580 60.1 3.8e-118 421.8
Vvi17g168 . 1 219 MAP Kinase Kinase Gene Family AT1G18350 51.4 1.4e-60 230.3
Vvi9g955 . 135 316 MAP Kinase Kinase Gene Family AT1G18350 53.8 3.2e-52 202.6
Vvi17g168 . 1 219 MAP Kinase Kinase Gene Family AT1G73500 55.5 9.5e-65 244.2
Vvi9g955 . 135 313 MAP Kinase Kinase Gene Family AT1G73500 54.7 3.8e-53 205.7
Vvi9g955 . 136 313 MAP Kinase Kinase Gene Family AT1G32320 50.5 1.7e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76197 PF00069 Pkinase 1.10E-58 CL0016 Vvi PK