Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1311 ATGGAACTAATTGTTCTACCAACTTTGGATTATTTTTACTCATCAACAAATCTTGAAAGAGATCACACAAGGGGAAAGAGAAAAGTACTGAAGATGGCTTCTTCCAGCTACTCCAACTCACCTTGCGCTGCCTGCAAGCTCTTAAGGAGAAAATGCATGCCGGGTTGTATTTTTGCACCATATTTCCCACCTGAAGAGCCTCAGAAATTCATCAATGTTCACAAGATATTCGGTGCAAGCAATGTCAGTAAACTTCTCAATGAAATTCTCCCCCATCAGAGGGAAGATGCAGTGAACTCTCTTGCCTATGAAGCTGAGGCAAGGATGAAAGACCCAGTCTACGGCTGTGTTGGAGCAATCTCAGTCCTCCAAAGACAAGTTCTTCGTCTCCAAAAGGAACTAGATGCCACCAATGCTGACCTGATCCGCTTCACCTGCAATGACATGTCTTCTTCACTGTCAGGGCCAGGTTCTTCCCAGTTTGGAAGACGAATGAGTCATGGAGGTGGAGGTGGAGGTGCTTCTTTTAATCAGAATTCTGGTTTGCCTCCTCCTTATCCTTCTCCATGGGATAACAACCCTTCAGGAGACAGCCATGAGAGTTGA 606 45.21 MELIVLPTLDYFYSSTNLERDHTRGKRKVLKMASSSYSNSPCAACKLLRRKCMPGCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRFTCNDMSSSLSGPGSSQFGRRMSHGGGGGGASFNQNSGLPPPYPSPWDNNPSGDSHES* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 27152773 27157752 + Vvi14g1311 Vvi14g1311 776378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1311 201 Pfam Lateral organ boundaries (LOB) domain 41 137 IPR004883 -
Vvi14g1311 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 194 - -
Vvi14g1311 201 ProSiteProfiles LOB domain profile. 40 141 IPR004883 -
Vvi14g1311 201 Coils Coil 120 140 - -
Vvi14g1311 201 MobiDBLite consensus disorder prediction 151 201 - -
Vvi14g1311 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 32 194 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1311 Vvi17g801 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13962 PF03195 LOB 1.40E-40 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1311 - - vvi:100243933 337.421