Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g133 ATGGCGTCGAGAAACCGAACGCTTCTCTACAGGAAGTACAGGGACGCCCTCAAGAGCGTCCGCGTTCCTGTGAGTTCGTCGCTGTCTTCGTCGACTCCTTCGACGAGTTCTGGCGGTGGCCCGGTGATCGAATTGGTCAGTACTTCGCTTCTGAATCCGAATCGGTCTTATGTTCCTCTCAGCACGGAGGATCCGGGAAATTCCAGTAAGGGGGCACTTACAGTGGGTCTACCTCCAGCTTGGGTGGATGTATCCGAAGAAATATCAGCAAACGTGCAACGGGCACGTACAAAAATGGCTGAATTAGTCAAAGCTCATGCTAAGGCTTTAATGCCGTCCTTTGGTGATGGTAAAGAAGATCAGCACAGGATTGAATCTCTTACCCAAGAGATAACTGATCTTTTGAAGAAATCAGAGAAGAGATTGCAGAAACTTTCTTCCACGGGGCCATCTGAGGATTCAAATGTTAGAAAAAATGTGCAGCGCTCTCTTGCTACCGACCTCCAGAACCTTTCAATGGAGCTTCGCAAGAAACAGTCATCATATTTGAAGCGTCTCCGGCAGCAAAAGGAAGGTCAGGATGGGGTTGACTTGGAGATGAACTTAAATGGAAATAAATCTTTGAGGGAAGATGACGAGTTCAGCGACTTGGGGTTTAATGAGCATCAGATGACCAAGCTAAAGAAAAATGAGGCCTTTACAGCTGAGAGGGAGAGAGAGATCCAACAGGTTGTGGAATCAGTAAATGAGCTTGCTCAAATCATGAAAGATCTGTCAGTCCTTGTGATAGACCAGGGCACCATTGTTGATCGAATAGATTACAACATTCAGAATGTCGCAGCATCAGTGGAGGAGGGCTTCAAACAACTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGAATGGTGATGTGTGCTACAGTGCTCGTCATCATGTGCTTCGTCATGTTGGTCCTTCTAATCCTCAAGACGATATTATTGTGA 984 46.85 MASRNRTLLYRKYRDALKSVRVPVSSSLSSSTPSTSSGGGPVIELVSTSLLNPNRSYVPLSTEDPGNSSKGALTVGLPPAWVDVSEEISANVQRARTKMAELVKAHAKALMPSFGDGKEDQHRIESLTQEITDLLKKSEKRLQKLSSTGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSSYLKRLRQQKEGQDGVDLEMNLNGNKSLREDDEFSDLGFNEHQMTKLKKNEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVAASVEEGFKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLILKTILL* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1219881 1227099 - Vvi14g133 Vvi14g133 775200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g133 327 ProSitePatterns Syntaxin / epimorphin family signature. 237 276 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi14g133 327 PANTHER SYNTAXIN 1 322 IPR045242 -
Vvi14g133 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Vvi14g133 327 SUPERFAMILY t-snare proteins 77 286 IPR010989 GO:0016020|GO:0016192
Vvi14g133 327 SMART tSNARE_6 226 293 IPR000727 -
Vvi14g133 327 Pfam SNARE domain 267 319 IPR000727 -
Vvi14g133 327 CDD SNARE_syntaxin16 235 292 - -
Vvi14g133 327 PANTHER SYNTAXIN-43-LIKE 1 322 - -
Vvi14g133 327 SMART SynN_4 72 187 IPR006011 GO:0016020
Vvi14g133 327 MobiDBLite consensus disorder prediction 22 41 - -
Vvi14g133 327 Gene3D - 78 285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g353 Vvi14g133 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g133 K08489 - vvi:100259549 583.563