Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1353 ATGGCTCTTTATCCTCTTCAGCTCTCCAGTTCCAGAGCTCTTCATCAATCTTCATTCCTCGGCCCTTTCTCCGCCTCTTCTTGGGGCAGAGATTTCTTGTGCTTCCCCAATGCAACTGCCGCTGTTACTTCGTCGAAAAAGGCGATTGCTAGGGTTTATGCAATGTCGAGTGACACTTCTTCTTCGTTCAAGATGAATCTGAATGAGTATATGGTCACTCTTGAGAAACCGCTCGGTATTCGGTTCGCTCTCTCCGCGGACGGCAAAGTCTTTGTCCATGCTCTTAAGAAAGGGGGAAATGCAGAGAAGTCGAGAATAATTATGGTAGGGGACACTTTGAAAAAGGCAAGTGACTCGCCTGATGGTGGCCTTGTTGAGATCAAAGACTATGGTGATACACAGAAGATGCTGGAGCAGAAAACAGGATCTTTTAGTCTCGTTCTTGAGAGGCCCTTCTCTCCTTTTCCAATTCAACAACTGCATCTAATGAGTGATCTTGATATTTTATTTAATAGAGGTCGTGTTCCTGTTGCCACTTGGAACAAAACTATATTGGCATCAAATTTGCAAACATGTTCTGACGGTGGTGGGAATTCTGGGTTTGTCACATTTTCACCAAAGTTTATAACTTCCCAAGGATGGAAGTTTCTGATGGGTCAAAATGGGGATGTTAACTCGAAAATGCAGAGAAACATTCTCTCTCCACCCATCAGCCAACTTGTTTGTATTTTTTCAGAGGAAGAGTCTGGAGATGTTGAATGGGCTCATGGGAGCTTTCCACTGGATGAATATATTAAGGCACTGGATCGTTCTAAAGGCGAACTATATTATAATCACTCTCTTGGTATGCGTTACAGTAAGATTACAGAGCAAATATACGTAGGATCATGCATCCAAACCGAAGCCGATGTGGAAACTTTGTCAAATGCAGGAATCACTGCCATACTGAATTTCCAGAGTGGAATTGAAGCAGAAAATTGGGGAATCAATTCCAGATCAATCAATGAGTCATGCCAAAAATTCAATATCCTTATGATCAACTATCCTATTAGGGAGGTTGATTCTTATGGTATGAGGAAAAAACTACCATTTTGTGTTGGGCTCTTATTGCGCTTGTTAAAAAAGAATCATCGTGTGTTTGTCACTTGTACTACTGGTTTTGATCGGTCACCTGCTTGTGTGGTTGCATATCTGCACTGGATGACAGATACTTCCCTTCATGCAGCTTACAATTTCGTGACCGGGTTGCATTCATGCAGGCCTGACAGACCAGCAATTGCTTGGGCAACGTGGGATCTTATAGCCATGGTCGAAAAAGGCAAACACGATGGGCCTGCAACCCATGCTGTGACCTTTGTGTGGAATGGGCACGAGGGGGAGGAGGTATTTTTGGTTGGAGATTTTACTGCAAACTGGAAAGAACCAATTAAGGCAGTCCACAAGGGTGGATCAAGATATGAAGTTGAAGTTAGACTTACACAAGGGAAGTACTACTATAAGTTTATTACTAATGGGCAATGGAGGCATTCGACAGCTTCACCAACAGAAAGGGATGAAAGGGCGAATGTTAACAATGTGATTGTGGTTGGTGATATTGCCAGTGTCAGGCCTTCTATCCAACAACAAAAGAAAGACTCCAATGTTGTAAAGGTGATTGAGAGGCAGTTGACCGAAAATGAGCGATTTATGCTGGCAAAGGCAGCCCGCTGCATTGCATTTTCTGTCTGTCCGATCAGACTGGCTCCCAAATAG 1752 43.38 MALYPLQLSSSRALHQSSFLGPFSASSWGRDFLCFPNATAAVTSSKKAIARVYAMSSDTSSSFKMNLNEYMVTLEKPLGIRFALSADGKVFVHALKKGGNAEKSRIIMVGDTLKKASDSPDGGLVEIKDYGDTQKMLEQKTGSFSLVLERPFSPFPIQQLHLMSDLDILFNRGRVPVATWNKTILASNLQTCSDGGGNSGFVTFSPKFITSQGWKFLMGQNGDVNSKMQRNILSPPISQLVCIFSEEESGDVEWAHGSFPLDEYIKALDRSKGELYYNHSLGMRYSKITEQIYVGSCIQTEADVETLSNAGITAILNFQSGIEAENWGINSRSINESCQKFNILMINYPIREVDSYGMRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRSPACVVAYLHWMTDTSLHAAYNFVTGLHSCRPDRPAIAWATWDLIAMVEKGKHDGPATHAVTFVWNGHEGEEVFLVGDFTANWKEPIKAVHKGGSRYEVEVRLTQGKYYYKFITNGQWRHSTASPTERDERANVNNVIVVGDIASVRPSIQQQKKDSNVVKVIERQLTENERFMLAKAARCIAFSVCPIRLAPK* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 27693163 27699967 + Vvi14g1353 Vvi14g1353 776420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1353 583 Gene3D Immunoglobulins 437 533 IPR013783 -
Vvi14g1353 583 Gene3D Protein tyrosine phosphatase superfamily 277 564 IPR029021 -
Vvi14g1353 583 ProSiteProfiles Dual specificity protein phosphatase domain profile. 284 442 IPR020422 GO:0006470|GO:0008138
Vvi14g1353 583 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 25 583 - -
Vvi14g1353 583 SMART dsp_5 284 439 IPR020422 GO:0006470|GO:0008138
Vvi14g1353 583 CDD E_set_AMPKbeta_like_N 450 529 - -
Vvi14g1353 583 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 276 416 IPR029021 -
Vvi14g1353 583 SUPERFAMILY E set domains 448 530 IPR014756 -
Vvi14g1353 583 Pfam Dual specificity phosphatase, catalytic domain 292 420 IPR000340 GO:0008138|GO:0016311
Vvi14g1353 583 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 25 583 IPR030066 GO:0005983
Vvi14g1353 583 Pfam Glycogen recognition site of AMP-activated protein kinase 450 530 IPR032640 -
Vvi14g1353 583 CDD DSP_laforin-like 283 428 IPR045204 GO:0019203|GO:0046838
Vvi14g1353 583 ProSiteProfiles PDZ domain profile. 71 152 IPR001478 GO:0005515
Vvi14g1353 583 SUPERFAMILY PDZ domain-like 52 156 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1353 - - vvi:100252584 1182.16