Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1377 ATGCTCTTCCTCGGGAACGGTGATTCTCTTTTTCGAGGACCAAGATCAATTATGAACATCGAGGAAACCTCGAAAAAGAGGCCATTTTTCACCTCGCCAGAAGACATGTTCGATGAGGAATATTACGACGAACAGATGCCGGAGAAGAAACGTCGCCTCACTCCTGAACAGGTACATCTGCTGGAGAAGAGCTTTGAGGCGGAGAACAAACTGGAGCCGGAGCGCAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAGCCCAGGCAGGTGGCGGTCTGGTTCCAGAATCGCCGAGCACGGTGGAAGACTAAGCAGTTGGAGAGGGACTATGATCTCCTCAAATCTTCTTATGATTCCCTTGTGTCTGAATATGACTCCATCCTCAAGGAGAAGGAGAAGCTCAAATCTGAGGTTGTTTCCTTAACTGAGAAGCTGCAAGCTAAAGAGGTGACTGGAACACCAACATTAACTGTTCAGAAAGTTGAACCACTTCAGGCAGATGCAGCCGACGTGCCACCTGTCCCATGCAGCGTAAAGGTTGAGGACCGCCTGAGTTCTGGAAGTGGCGCAAGTGCAGTGGTCGATGAAGATGGTCCACAGCTCCTGGACAGTGGTGACTCCTACTTCCAAAATGCTGAATACCCTGGATGCTTGGGTGTCCAATCGGAAGAGGATGATGGGAGTGATGATGGGCAGAGTTATTTCTCTGATGCCCTTGTGTTGCCCGAGCACCATCACGAGGAGGGAGAGGCTTTGTTGTGGGTTTGGCCTTAA 774 50.78 MLFLGNGDSLFRGPRSIMNIEETSKKRPFFTSPEDMFDEEYYDEQMPEKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLVSEYDSILKEKEKLKSEVVSLTEKLQAKEVTGTPTLTVQKVEPLQADAADVPPVPCSVKVEDRLSSGSGASAVVDEDGPQLLDSGDSYFQNAEYPGCLGVQSEEDDGSDDGQSYFSDALVLPEHHHEEGEALLWVWP* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 27846209 27848937 + Vvi14g1377 Vvi14g1377 776444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1377 257 Coils Coil 117 151 - -
Vvi14g1377 257 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981|GO:0006355
Vvi14g1377 257 Pfam Homeodomain 49 102 IPR001356 GO:0003677
Vvi14g1377 257 PRINTS Lambda-repressor HTH signature 75 84 IPR000047 GO:0003677
Vvi14g1377 257 PRINTS Lambda-repressor HTH signature 84 100 IPR000047 GO:0003677
Vvi14g1377 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 241 IPR045224 GO:0003700
Vvi14g1377 257 Pfam Homeobox associated leucine zipper 104 146 IPR003106 GO:0006355|GO:0043565
Vvi14g1377 257 Gene3D - 42 110 - -
Vvi14g1377 257 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Vvi14g1377 257 SUPERFAMILY Homeodomain-like 36 106 IPR009057 -
Vvi14g1377 257 SMART HOX_1 47 108 IPR001356 GO:0003677
Vvi14g1377 257 CDD homeodomain 49 105 IPR001356 GO:0003677
Vvi14g1377 257 MobiDBLite consensus disorder prediction 186 206 - -
Vvi14g1377 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 241 - -
Vvi14g1377 257 MobiDBLite consensus disorder prediction 217 236 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13968 PF00046 Homeodomain 2.60E-18 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1377 K09338 - vvi:100257769 497.278