Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g139 ATGGCAACTTTTGCCAAACCAGAGAATGCTTTGAAGCGAGCTGAAGAGTTGATCAATGTGGGGCAGAAGCAAGATGCCTTGCAAGCACTTCATGATCTTATCACCTCAAAGAGGTACCGAGCCTGGCAGAAGACACTTGAAAGGATCATGTTCAAATATGTAGAGCTTTGTGTTGACATGCGGAGGGGTAGGTTTGCTAAGGATGGTCTGATCCAATACCGTATTGTATGTCAACAAGTGAATGTTACTTCTTTGGAGGAAGTAATCAAACACTTCATGCATCTGTCTACTGAGAAAGCAGAACAAGCACGAAATCAGGCACAGGCCCTGGAAGAAGCTCTTGATGTTGATGACCTTGAAGCAGATAAAAGACCGGAAGATCTAATGTTAAGTTATGTCAGTGGAGAGAAAGGAAAGGATAGATCTGACCGTGAGCTTGTTACCCCTTGGTTTAAATTTTTGTGGGAGACCTATAGAACAGTGCTGGAAATATTACGAAACAACTCAAAGTTGGAAGCACTTTATGCGATGACAGCACACCGGGCCTTCCAGTTCTGCAAACAATACAAACGAACAACAGAGTTCCGCAGACTCTGTGAAATAATCAGAAATCATCTATCAAACCTTAACAAATATAGGGACCAAAGGGACCGACCTGACTTATCGGCTCCTGAAAGCTTACAGCTTTATCTTGATACGAGATTTGAGCAGCTAAAGATTGCTACTGAACTCGAACTTTGGCAGGAAGCGTTTCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCCAAAGCATCTTTGATGGTCGTTTATTATGCCAAGTTAACAGAAATATTCTGGGTTTCATCCAGTCATCTCTATCATGCTTATGCATGGTTCAAGCTTTTTTCATTGCAGAAGAGCTTCAATAAGAATTTAAGTCAGAAGGACTTGCAATTGATTGCATCATCTGTTGTTTTGGCTGCACTTTCAGTGACTCCCTATGATCTCACACGTGGTGCATCTCATTTGGAACTAGAAAATGAGAAAGAGCGCAATCTCAGGATGGCTAATCTTATAGGATTCAATCTGGAACCTAAACTTGATGGTAGAGAAGTGCTATCTCGGTCTGCTCTTCTTTCAGAACTGGTCTCTAAAGGTGTTATGACCTGCGTTACTCAAGAGGTAAAGGATCTGTATCATCTTCTAGAGCACGAATTTCTGCCTCTAGATCTTGCATCGAGGGTACAGCCCTTGTTAGCAAAAATTTCAAAACTTGGGGGCAAGCTTTCTTCAGCTTCTTCTGTTTCTGAAGTGCAACTGTCCCAGTATGTTCCGGCCCTGGAAAAGCTTGCCACCCTGAGGTTGCTTCAGCAGGTGTCTCAAGTGTATCAGACTATGAAAATTGAGAGCTTGTCTAAGGTGATCCAATTTTTTGATTTCTCTGTCGTGGAGAAGATCTCTGTGGATGCTGTCAAACATGGCTTTATTGCAATGAAAGTTGACCACATGAAGGGTGTCATCTTGTTTGGAAATTTGGGTCTTGAATCTGATAGGATGCGGGATCACCTCACTGTTTTTGCTGAATTTTTAAATAAAGCAAGGGCTCTGATACATCCACCTGCCAAGAAAGCATCAAAATTGGGTGACATGCTTTCAGGTTTAGCAGAGACTGTGGATAAGGAACACAAGAGGCTTCTTGCTCGGAAATCAATTATAGAGAAACGCAAGGAAGAGCAAGAACGCCAACTGTTGGAAATGGAGCGTGAGGAGGAGTCAAAGAGGCTTAAGCTACAAAAGATAACTGAAGAGGCAGAACAGAAAAGGCTTGCATCCGAGTATGAGCAAAGGAAAACTCAAAGGATCCTTAGAGAAATTGAGGAGCGGGAACTTGAAGAAGCACAGGCACTACTGCAGGAAGCTGAGAAGCGTAGCAAAAAGAAGGGAAAGAAGCCTATTGCAGAGGGAGAAAAGGTTACCAAGCAATCTTTGATGGAGCTGGCCCTGAGTGAGCAACTTAGGGAGAGACAGGAAATGGAGAAGAAGTTGCAAAAACTGGCGAAAACAATGGATTATTTGGAAAGAGCTAAAAGAGAAGAGGCAGCTCCTTTAATTGAAGCTGCATTTCAACAGCGTCTAGTGGAAGAGAAGGCGTTTCATGAACATGAGCAGCAGCAAGAGATTGAAGTCAGTAGACAGCGCCACGATGGAGACCTCAGGGAGAAAAATAGACTGGTCCGGATGTTGGACAAAAAGATGATATTCCAGGAAAGAGTTATGAACCGTCGGCAAGCAGAATATAGCAGACTGAGAGCAGAGAGAGAGGAGCGAATCAGTCAAATCATACAGAGTCGGAAACAGGAGAGGGAAGCTAAGAGGAAGATGTTATTCTACTTGAGGTCAGAAGAGGAAAGGATGAAAAAGGCACGTGAAGAGGAGGAAGCCCGTAAGCGTGAAGAGGCTGAGAGGCGGAGAAAAGAAGAAGCTGAACGAAGGGCGAAGTTGGATGAGATAGCTGAGAAGCAGAGGCAAAGAGAACGGGAACTGGAAGAAAAAGAAAAGCTTAGGAGAGAAGCTCTCTTGGCCTGGATCTGCTGCTCCAGCTGCAGCTGCTGCTGCTGCCGCACCAGCGTCTGGAAAATATGTGCCCAAGTTTCGTAG 2655 43.95 MATFAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKTLERIMFKYVELCVDMRRGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARNQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLSNLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKASLMVVYYAKLTEIFWVSSSHLYHAYAWFKLFSLQKSFNKNLSQKDLQLIASSVVLAALSVTPYDLTRGASHLELENEKERNLRMANLIGFNLEPKLDGREVLSRSALLSELVSKGVMTCVTQEVKDLYHLLEHEFLPLDLASRVQPLLAKISKLGGKLSSASSVSEVQLSQYVPALEKLATLRLLQQVSQVYQTMKIESLSKVIQFFDFSVVEKISVDAVKHGFIAMKVDHMKGVILFGNLGLESDRMRDHLTVFAEFLNKARALIHPPAKKASKLGDMLSGLAETVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLKLQKITEEAEQKRLASEYEQRKTQRILREIEERELEEAQALLQEAEKRSKKKGKKPIAEGEKVTKQSLMELALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAFQQRLVEEKAFHEHEQQQEIEVSRQRHDGDLREKNRLVRMLDKKMIFQERVMNRRQAEYSRLRAEREERISQIIQSRKQEREAKRKMLFYLRSEEERMKKAREEEEARKREEAERRRKEEAERRAKLDEIAEKQRQRERELEEKEKLRREALLAWICCSSCSCCCCRTSVWKICAQVS* 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1316447 1326327 - Vvi14g139 Vvi14g139 775206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g139 884 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 860 IPR027512 GO:0005852
Vvi14g139 884 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 860 - -
Vvi14g139 884 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 861 IPR027512 GO:0005852
Vvi14g139 884 Gene3D UVR domain 217 267 - -
Vvi14g139 884 SMART PINT_4 441 526 IPR000717 -
Vvi14g139 884 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Vvi14g139 884 Coils Coil 667 697 - -
Vvi14g139 884 Pfam PCI domain 373 509 IPR000717 -
Vvi14g139 884 Coils Coil 561 602 - -
Vvi14g139 884 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 526 - -
Vvi14g139 884 Coils Coil 93 120 - -
Vvi14g139 884 Coils Coil 622 649 - -
Vvi14g139 884 Coils Coil 797 856 - -
Vvi14g139 884 Gene3D - 367 492 - -
Vvi14g139 884 Gene3D - 268 342 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g139 K03254 - vvi:100244162 1460.28