Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1401 ATGGCTCCAAGCTCGGTTGTACTCACAATCGAAAAGCCTAGCAACTTCTCTCTAGTGGAGATCACAGGTTCAAAGACATCCATGTTTCCCGAGAAGGAAAAGGCTGCTAGTCCCAAGCAGTTTACATGGGTTCTTCTCTTGAAAGTTCACAGAGCTCTTGCTTGCCTTTCATGGCTGGCGACTGGTGCGTGGACTGTGTTTGTTGCAGCCAAGAAGCGTTTGGCATTATCTGAGATAAAGGAAGAAGAACCCACGAACAGGGGAAGGTTGTACAGATTCATCAGAGCTTTTGTCTTCATTTCAATAGTGGCTTTGTTCATGGAAGTCATTGCCCATTTCAAGAAATGGAATTTGAATCTGATTCAGCCATTGGAGGTCCAGGGCCTTGTGCAGTGGTCCTACATGGCTTGGCTGTCCTTCAGAGTTGATTACATTGCCCCTTTGGTTCTAATTCTTTCCAAATTCTGCATTGTCCTTTTCTTGATTCAATCTCTCGATCGGCTTTTTCTCTGTTTTGGCTGTTTCTGGATTAAGCACAAGAAGTTGAAGCCCGAGATGGATGCAGACGCCTATGACATTGAGGATGGCTCAAGTTTCCCAATGGTCCTTGTTCAGATTCCAATGTGCAATGAAAAAGAGGTATATGCACAATCAATCTCTGCAGTCTGTCAGCTGGATTGGCCGAGGGAGCGGCTCCTGATTCAAGTTCTCGATGACTCAGACGATGAAAATGTACAGCTACTAATAAAAAATGAAGTCTCTTCATGGAACCAGAAAGGGGTGAACATAATCTACAGACATCGATTTGTAAGAACCGGGTACAAAGCTGGCAATCTGAAATCAGCCATGGCCTGTGACTATGTTAAAGACTACGAGTTTGTTGCCATTTTCGACGCAGACTTCCAGCCCAATCCTGATTTCCTCAAGCAAACAATCCCTCACTTTAAGGGAAATCCTGAGGTGGGTCTTGTCCAGGCTCGGTGGTCTTTTGTGAACAAGGATGAGAATCTACTCACTAGGCTCCAGAACATCAATCTGTGCTTCCATTTCGAGGTGGAACAGCAAGTCAATGGCCTTTTCCTCGAATTCTTCGGGTTCAATGGGACTGCAGGTGTGTGGAGAATTAAGGCCTTAGAGGAGTCAGGAGGATGGCTGGAGAGAACAACAGTTGAGGATATGGACATTGCCGTCCGAGCCCACTTGCATGGGTGGAAGTTCATCTTCCTCAATGATGTCAAAGTGCCCTGTGAATTACCAGAGTCCTATCAAGCTTACAAGAAGCAGCAGCATCGCTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTCCCTGCTATCGTAACCTCCAAGATGGGGATATGGAAGAAGGCCAATTTGATATTCCTGTTCTTTCTTCTAAGGAAACTAATTCTTCCCTTCTACTCATTCACACTCTTCTGTATCATACTTCCATTAACCATGTTCATACCGGAGGCTGAATTGCCTGTTTGGGTGATCTGCTACATCCCCATTTTCATGTCCCTTTTGAACATTCTCCCAGCCCCAAAATCATTCCCATTCCTAGTCCCATACCTACTATTCGAAAACACAATGTCTGTCACAAAATTCAATGCCATGGTATCAGGGCTATTTCAGCTGGGAAGCGCCTACGAATGGGTGGTGACAAAGAAGACAGGCAGCAAAGTGAAGGAACAGAAGGCCCCTCATCTGAAGAAGAAGAAGAGAAACAGGCTCTACAGGAAGGAGCTGGCACTGGCTTTTCTTCTGCTTACTGCCTCTGCAAGAAGCCTACTGTCAGCACATGGGGTTCACTTCTACTTCTTGCTTTTCCAGGGACTGTCTTTTCTGGTGGTGGGATTGGACTTAATTGGGGAGCAGATGATTGATTGTAAAATCTTATATGTTATCATTGTTTGCAACAATGAGGACATCAGTAAAGAAAGCAACTTCAACACGATCTTAGAAATTAGATTTTTTTTAGAATAG 1989 44.85 MAPSSVVLTIEKPSNFSLVEITGSKTSMFPEKEKAASPKQFTWVLLLKVHRALACLSWLATGAWTVFVAAKKRLALSEIKEEEPTNRGRLYRFIRAFVFISIVALFMEVIAHFKKWNLNLIQPLEVQGLVQWSYMAWLSFRVDYIAPLVLILSKFCIVLFLIQSLDRLFLCFGCFWIKHKKLKPEMDADAYDIEDGSSFPMVLVQIPMCNEKEVYAQSISAVCQLDWPRERLLIQVLDDSDDENVQLLIKNEVSSWNQKGVNIIYRHRFVRTGYKAGNLKSAMACDYVKDYEFVAIFDADFQPNPDFLKQTIPHFKGNPEVGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGLFLEFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVKVPCELPESYQAYKKQQHRWHSGPMQLFRLCLPAIVTSKMGIWKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPVWVICYIPIFMSLLNILPAPKSFPFLVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKTGSKVKEQKAPHLKKKKRNRLYRKELALAFLLLTASARSLLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMIDCKILYVIIVCNNEDISKESNFNTILEIRFFLE* 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 28069278 28071952 + Vvi14g1401 Vvi14g1401 776468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1401 662 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 193 417 IPR029044 -
Vvi14g1401 662 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 1 560 - -
Vvi14g1401 662 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 561 628 - -
Vvi14g1401 662 Pfam Glycosyl transferase family group 2 294 496 IPR001173 -
Vvi14g1401 662 SUPERFAMILY Nucleotide-diphospho-sugar transferases 202 503 IPR029044 -
Vvi14g1401 662 PANTHER - 1 560 - -
Vvi14g1401 662 PANTHER - 561 628 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1401 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - vvi:100244115 1219.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g1401 . 6 628 REM Transcription Factor Family AT2G24630 67.6 7.4e-259 890.2
Vvi18g605 . 1 648 REM Transcription Factor Family AT2G24630 64.2 1.8e-252 869.0
Vvi9g969 ECH 1 437 REM Transcription Factor Family AT2G24630 82.8 1.4e-220 763.1
Vvi4g659 ECH 1 389 REM Transcription Factor Family AT2G24630 87.4 2.3e-199 692.6
Vvi14g1401 . 6 628 REM Transcription Factor Family AT2G24630 67.6 7.4e-259 890.2
Vvi18g605 . 1 648 REM Transcription Factor Family AT2G24630 64.2 1.8e-252 869.0
Vvi9g969 ECH 1 437 REM Transcription Factor Family AT2G24630 82.8 1.4e-220 763.1
Vvi4g659 ECH 1 389 REM Transcription Factor Family AT2G24630 87.4 2.3e-199 692.6
Vvi14g1401 . 6 628 REM Transcription Factor Family AT2G24630 67.6 7.4e-259 890.2
Vvi18g605 . 1 648 REM Transcription Factor Family AT2G24630 64.2 1.8e-252 869.0
Vvi9g969 ECH 1 437 REM Transcription Factor Family AT2G24630 82.8 1.4e-220 763.1
Vvi4g659 ECH 1 389 REM Transcription Factor Family AT2G24630 87.4 2.3e-199 692.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33