Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1456 ATGTCGTCGTTTGTTTCTCGGGAAAATGATCCCAAAGCACAGTACTTCTACAGTCGGAAAGAGAAATCCCTTGGCCTCTTGTGCACCAACTTTTTGAGCTTGTACGACCGGGAGGACGTCGAATCGATCGGACTCGACGATGCTGCAAGCCGATTAGGAGTTGAGCGGCGAAGGATTTATGATATTGTCAATATCTTAGAGAGTGTCGGTATTTTAGCGAGGAAAGCCAAGAATCAGTATTCGTGGAAGGGTTTTGGGGCAATTCCTAGGGCTTTGGAGGAGCTCAAGGAGGAGGGTTTGAGAGAGAACTTCAGTATCTCAGACTGCTGCAACTTTGCAAAATCTCTAGATGACATAGAAGAGGGTGGGTCTTCCAATTCAAAATCTGATGGGCAAGACAGATCTTCTGGATTATCAAAAAATGATAACAGAAGAGAGAAATCTCTTGGGCTTCTTACACGGAATTTTATCAAGCTTTTCCTTTGCTCGGATGCAGATTTGATCTCCTTAGATTGTGCTGCAATGGCTTTATTGGGTGATGGACACAATTCAACAGCTATGAGAACAAAAGTTAGACGCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACCTAATAGAGAAGACCCCTCACCCAGAGAGCAGAAAACCAGCATTTAGGTGGCTGGGAGTAAAAGGAAAACTCAAGAACGCATCTGCTACTGCTATGGATGTCCAACAGCCTAAGAAGAGAGTGTTCGGGACTGATGTTACCAACTATAGTTTGAAGAGAAATAAGGCGGATTCTTCAACCGATTGGAAGTCAAACCAGAATATAAATATGCCATTGCATATGAAACCTGATGATTTGGAAAACAATGGGGATGGATTGGAGCAGAATTCAAAACATAGCTCAAAGGGGTTTGTATTTGGTCCATTCACTCCTGCATCTGCTCCCGGAGTAGGAGAGTCTGCAAATAAAATCATGAAACCTACACAGGACTGGGAGAGCCTGGCTTCAACCTTTCGTCCTCAGTATCGGAATCAAGCTATCAGTGACCTATTTGGACATTATGTGGAAGCATGGAAGTCATGGTATGTTGAAGTTGCTGGGAAGAAACAGACGAACTCTAGATAA 1119 43.52 MSSFVSRENDPKAQYFYSRKEKSLGLLCTNFLSLYDREDVESIGLDDAASRLGVERRRIYDIVNILESVGILARKAKNQYSWKGFGAIPRALEELKEEGLRENFSISDCCNFAKSLDDIEEGGSSNSKSDGQDRSSGLSKNDNRREKSLGLLTRNFIKLFLCSDADLISLDCAAMALLGDGHNSTAMRTKVRRLYDIANVLSSMNLIEKTPHPESRKPAFRWLGVKGKLKNASATAMDVQQPKKRVFGTDVTNYSLKRNKADSSTDWKSNQNINMPLHMKPDDLENNGDGLEQNSKHSSKGFVFGPFTPASAPGVGESANKIMKPTQDWESLASTFRPQYRNQAISDLFGHYVEAWKSWYVEVAGKKQTNSR* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 28573088 28578159 - Vvi14g1456 Vvi14g1456 776523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1456 372 MobiDBLite consensus disorder prediction 261 276 - -
Vvi14g1456 372 SUPERFAMILY Winged helix DNA-binding domain 18 82 IPR036390 -
Vvi14g1456 372 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 1 363 - -
Vvi14g1456 372 MobiDBLite consensus disorder prediction 261 299 - -
Vvi14g1456 372 Pfam E2F/DP family winged-helix DNA-binding domain 146 224 IPR003316 GO:0005667|GO:0006355
Vvi14g1456 372 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Vvi14g1456 372 PANTHER TRANSCRIPTION FACTOR E2F 1 363 IPR015633 GO:0000978|GO:0006357
Vvi14g1456 372 SMART E2F_TDP_2 144 224 IPR003316 GO:0005667|GO:0006355
Vvi14g1456 372 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Vvi14g1456 372 Gene3D - 139 227 IPR036388 -
Vvi14g1456 372 Gene3D - 15 87 IPR036388 -
Vvi14g1456 372 SUPERFAMILY Winged helix DNA-binding domain 146 225 IPR036390 -
Vvi14g1456 372 MobiDBLite consensus disorder prediction 121 142 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1456 Vvi17g681 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13972 PF02319 E2F_TDP 1.40E-19 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1456 - K09391 vvi:100266295 749.969