Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1485 ATGAAAATGGCTATATACCCATTACCCACAAGTCAAGTATCAAAATTTGTATGGACAGGACCTCACCAAACACATATGATCATGAAAATGGGGGCATATAAGTTCAGTAGTCTTTTGTTGTTGTCTTTCTTTGCATTTGCTGTGTTGGCTCCGTCGATTCGAGCCCACATCGGAGAATTTGATGAGGTGTGGCAGAAGCGAGCTGAGGAGGCCCAGAAGGCTGCATTGGAGGCCTATCAACCGAACCCGGAAGAGGTCACCAACCAGTTCAACAAGAATGTCCGCAAGTCCATGCAGGGAACCAACACAACGAGGAGGAACTTGAGGAGTAACAATGGTCCATGCATGGCCACGAACCCTATCGACAGGTGCTGGAGATGCAAGCAGGACTGGGCTAAAAACCGAAAGAAGCTAGCTGACTGTGTGCTGGGGTTCGGGCGCAGGACTACAGGAGGAAAGGATGGAGAATTCTATGTGGTAACTGATGCCTCAGACAATGACATGATCGACCCAAAACCCGGTACTCTTCGCCATGCTGTGATCCAGAAGGAGCCACTGTGGATCATATTTGCCCGCGACATGATAATAAGGTTGAAACAGGAGCTGATCATGGCTGGCAACAAGACCATCGATGGCCGTGGGGCTAATGTTCACATTGCATATGGTTGTGGCATTACTATACAGTTTGTGAAGAATATCATCATCCATAACCTCCATATACATGACATTGTTCCTGCTCAAGGTGGGATGATTAGAGACTCTGTAGATCATTATGGCCTCAGAACTGCCAGTGATGGAGATGGGGTTTCGATATTCGGCTCATCCAACGTCTGGGTGGATCATCTCTCCATGTCCAACTGCAAGGATGGGCTTGTTGATGTGATCATGGCATCCACAGCCATCACCATTTCAAACTGCCATTTCACTAATCACAATGAGGTGATGCTGTTTGGTGGCAGCAATAATTTCCAGGGCGATAAGATCATGCAAGTGACAGTGGCATTCAACCATTATGGAAGAGGACTAGTCCAGAGAATGCCAAGATGCAGATATGGCTTCGTCCATGTTGTCAACAACGATTACACTCACTGGCTCATGTATGCCATTGGTGGTAGCCAGAACCCCACCATCATAAGCCAGGGGAACCGGTTCATCGCCCCTCCAAATATGGCTTGCAAGGAGGTAACCAAGAGGGACTATGCAAGCCCAGATGAGTGGAAATCTTGGACATGGATCTCACAAGGGGATCTGCTACAAAACGGAGCATTCTTTGTTCAGTCTGGAGACCCTAAAAAGAAGCATCCATTCACCAGGTACGACATGATAAAGGCGAAGCCTGGCACATTTGTTAACAGGCTCACTCGCTTTTCGGGGTCGCTGGGCTGCAAGGTGAACCAACCATGTTAG 1407 48.05 MKMAIYPLPTSQVSKFVWTGPHQTHMIMKMGAYKFSSLLLLSFFAFAVLAPSIRAHIGEFDEVWQKRAEEAQKAALEAYQPNPEEVTNQFNKNVRKSMQGTNTTRRNLRSNNGPCMATNPIDRCWRCKQDWAKNRKKLADCVLGFGRRTTGGKDGEFYVVTDASDNDMIDPKPGTLRHAVIQKEPLWIIFARDMIIRLKQELIMAGNKTIDGRGANVHIAYGCGITIQFVKNIIIHNLHIHDIVPAQGGMIRDSVDHYGLRTASDGDGVSIFGSSNVWVDHLSMSNCKDGLVDVIMASTAITISNCHFTNHNEVMLFGGSNNFQGDKIMQVTVAFNHYGRGLVQRMPRCRYGFVHVVNNDYTHWLMYAIGGSQNPTIISQGNRFIAPPNMACKEVTKRDYASPDEWKSWTWISQGDLLQNGAFFVQSGDPKKKHPFTRYDMIKAKPGTFVNRLTRFSGSLGCKVNQPC* 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 28868693 28870986 + Vvi14g1485 Vvi14g1485 776552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1485 468 SMART amb_all 193 390 IPR002022 -
Vvi14g1485 468 Pfam Pectate lyase 201 384 IPR002022 -
Vvi14g1485 468 PRINTS Pollen allergen Amb family signature 141 158 IPR018082 -
Vvi14g1485 468 PRINTS Pollen allergen Amb family signature 165 190 IPR018082 -
Vvi14g1485 468 PRINTS Pollen allergen Amb family signature 201 217 IPR018082 -
Vvi14g1485 468 PRINTS Pollen allergen Amb family signature 265 286 IPR018082 -
Vvi14g1485 468 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Vvi14g1485 468 PRINTS Pollen allergen Amb family signature 367 386 IPR018082 -
Vvi14g1485 468 PRINTS Pollen allergen Amb family signature 409 433 IPR018082 -
Vvi14g1485 468 PRINTS Pollen allergen Amb family signature 439 462 IPR018082 -
Vvi14g1485 468 Gene3D - 118 461 IPR012334 -
Vvi14g1485 468 PANTHER PECTATE LYASE 36 468 - -
Vvi14g1485 468 Pfam Pectate lyase, N terminus 56 108 IPR007524 GO:0030570
Vvi14g1485 468 SUPERFAMILY Pectin lyase-like 119 458 IPR011050 -
Vvi14g1485 468 PANTHER PECTATE LYASE 18-RELATED 36 468 IPR045032 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1485 Vvi17g511 ECH
Vvi1g856 Vvi14g1485 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1485 K01728 - vvi:100254377 898.271