Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1493 ATGGGGGAGGTGAGAGAAGAAAATGAGAGACTAAAGACCATGTTGGAGAAAATTGGGAAGGATTATAAGTCTCTTCAACTGCAGGTTTTTGACATTCTTCAACAAGAATCCTCCAAGAGGCCTGTGGATTCAGCTCCTGCCATTGATGAAGAATCCAAAGAACTCGAACTAGTTTCCCTTTGCCTTGGAAGAAGTAGTCCAACTGATGGTAAAAGAGATGGTAAGTCCAGCATCGCTAGCAAGGCCAAGGAAGACGACGATGAGCTGAATGCTGGTCTCACCCTTGGTTTAGACTCAAAATTTCAAGTGTCTAAACTGGATGTGACAGAGTTTGCGTCCAACTCGAGTCCAACCGAGAATAGTATCGAGGAGGTGAAGGAAGAGGAAGCTGGGGAGACATGGCCTCCCAGTAAAGTTTTGAAGACAATGAGAACCGGAGATGAGGTTTCACAGCAGTCCCATGTGAAGAGAGCCAGGGTTTCAGTTAGAGCTCGATGTGACACGCTAACGATGAATGATGGGTGCCAATGGAGGAAATATGGACAGAAAATAGCTAAGGGGAATCCATGCCCACGAGCTTATTATCGGTGTACAGTTGCACCATCTTGCCCAGTGAGAAAGCAGGTGCAGAGATGTGCAGAGGACATGTCCATTTTGATCACTACCTATGAAGGAACTCACAACCACCCACTTCCGATGTCAGCCACAGCCATGGCTTCCACCACCTCTGCTGCAGCTTCCATGCTCATCTCCGGCTCTTCTGCCTCTCAGCCAGGCCTTGGTTCCTCACCTGCTGCTACTGAGCTCCATGGGTTGAACTTCAGTCTCCCTGATAATATGAGAACAAGGCAGCTCTATGCAGCAAACTCTTCCCCATTTCCAACTATTACTCTAGACCTCACCACTACAGCTTCATCATCCTCTCATTTCAGCAGGTTTTCCTCAAGCTTCAATTCTAGCACCCCAAGGTTCCCGTCAACAAGTCTTAGCTTTTCTTCCTCAGAATCCAACAGTGTACCTACAGTTTGGGGCAATGGGTGCCTTAATTATGGCATACTACCACATAATAAAGCTCAAATAGGGTCTCTAAATCTTGGAAGACAACCACCAGAACATTTTCATCAACCCTACATGGAAAAGAACGGCCAAGCACCTATTCAACAGTCCTTAACTGAAACATTGACCAAGGTGATAACATCAGACCCAAGTTTTCGGACAGTTATAGCTGCGGCGCTCTCATCAATGGTTAGCAGCAGTACCGGCCAACCAAACCCAGGTGCAGGAGAGAGCTTGGGCCAGAATTTGAAGTGGGGTGAGACTACTCAGGCCATTTCTACCAACCCATTGAGCCAGAATGGGAAGGGATGTGCACCTGGGTACTTAAATGCGTCATCATCTTCAAATTCTCAGACAGGAAACTCCATCCTCCTCCAGCCTCCATTTCCAGTTTCCATCCCTAGAAGTGGTACTTCTGGGTCTGCTGCTGAGAACAGGGACCAGAACAACTGA 1509 47.45 MGEVREENERLKTMLEKIGKDYKSLQLQVFDILQQESSKRPVDSAPAIDEESKELELVSLCLGRSSPTDGKRDGKSSIASKAKEDDDELNAGLTLGLDSKFQVSKLDVTEFASNSSPTENSIEEVKEEEAGETWPPSKVLKTMRTGDEVSQQSHVKRARVSVRARCDTLTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCAEDMSILITTYEGTHNHPLPMSATAMASTTSAAASMLISGSSASQPGLGSSPAATELHGLNFSLPDNMRTRQLYAANSSPFPTITLDLTTTASSSSHFSRFSSSFNSSTPRFPSTSLSFSSSESNSVPTVWGNGCLNYGILPHNKAQIGSLNLGRQPPEHFHQPYMEKNGQAPIQQSLTETLTKVITSDPSFRTVIAAALSSMVSSSTGQPNPGAGESLGQNLKWGETTQAISTNPLSQNGKGCAPGYLNASSSSNSQTGNSILLQPPFPVSIPRSGTSGSAAENRDQNN* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 28923785 28926499 + Vvi14g1493 Vvi14g1493 776560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1493 502 SUPERFAMILY WRKY DNA-binding domain 164 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g1493 502 Gene3D WRKY domain 156 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g1493 502 ProSiteProfiles WRKY domain profile. 166 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1493 502 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 497 IPR044810 GO:0003700
Vvi14g1493 502 MobiDBLite consensus disorder prediction 460 502 - -
Vvi14g1493 502 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 1 497 - -
Vvi14g1493 502 MobiDBLite consensus disorder prediction 60 87 - -
Vvi14g1493 502 Coils Coil 1 28 - -
Vvi14g1493 502 SMART WRKY_cls 171 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1493 502 MobiDBLite consensus disorder prediction 112 135 - -
Vvi14g1493 502 Pfam WRKY DNA -binding domain 172 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1493 502 MobiDBLite consensus disorder prediction 68 87 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1493 Vvi17g518 ECH
Vvi1g861 Vvi14g1493 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13976 PF03106 WRKY 3.10E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1493 - - vvi:100255935 910.598