Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g15 ATGGGTATTAAGGGTTTAACGAAGCTTCTGGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCATTGTTGTTGGAAGAAGTGGGACTGAAATGCTCACAAATGAGGCTGGCGAAGTTACTAGTCATTTGCAAGGAATGTTTTCTCGGACAATTAGGCTTCTGGAGGCTGGATTGAAGCCTGTTTATGTTTTTGATGGGAAGCCTCCAGATTTGAAAAAGCAAGAGCTTGCAAAACGTTTCTCAAGGAGGGCAGATGCCACTGAGGATTTGACAGAAGCCTTAGAGACTGGCAATAAAGAAGAGATTGAAAAATTCAGTAAAAGAACAGTGAAGGTGACAAAGCAACACAACGAAGATTGCAAAAAGCTTTTAAGACTGATGGGAGTGCCTGTAATTGAGGCTCCTTCTGAAGCAGAGGCACAGTGTGCTGCACTTTGCAAATCAGGGAAGGTCTATGCTGTGGCTTCTGAAGACATGGATTCCCTAACTTTTGGAGCTCCTAAATTTCTTCGTCACTTAATGGACCCTAGCTCAAGAAAAATCCCAGTGATGGAATTTGATATTACAAAGATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGGTATTGGGGGGCAGACTGCATTGAAGCTCATCCGCCAACATGGCTCCATCGAGAATATATTGGAGAACATAAACAGAGAAAGGTACCAGATACCTGATGATTGGCCATATCAAGAGGCTCGGCGCCTTTTTAAAGAACCCCAAGTCTTTTCTGATGATGAGCAACTTGACATCAAGTGGAGTGCTCCAGATGAAGAAGGGTTGATAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGGCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCGATTAGAATCATTCTTTAAACCAGTCGTTAGCTCATCAATACCCATCAAGCGTAAGGAAAGCAAATGCATGCTTGGATCTCCAAAACCAATAATCAAGCATAAAATTTTCACTCAGCAAGTTTGTATTCAGTCCCGGCGATATATCATTGGCAGCTCAAGCATGCCAACTTTAGGTCTGGGTTCCAAGCACTCCACGCCATTATTCAGAGGTGTCTGCTTTGGAGCATGA 1251 43.09 MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPQVFSDDEQLDIKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFFKPVVSSSIPIKRKESKCMLGSPKPIIKHKIFTQQVCIQSRRYIIGSSSMPTLGLGSKHSTPLFRGVCFGA* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 172512 179496 - Vvi14g15 Vvi14g15 775082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g15 416 Gene3D - 10 222 - -
Vvi14g15 416 SMART xpgn3 1 108 IPR006085 GO:0004518
Vvi14g15 416 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Vvi14g15 416 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Vvi14g15 416 Gene3D - 223 286 - -
Vvi14g15 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Vvi14g15 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Vvi14g15 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Vvi14g15 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Vvi14g15 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Vvi14g15 416 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 351 IPR036279 -
Vvi14g15 416 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Vvi14g15 416 CDD PIN_FEN1 4 331 - -
Vvi14g15 416 SMART 53exo3 29 299 IPR002421 GO:0003677
Vvi14g15 416 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Vvi14g15 416 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 381 IPR006084 -
Vvi14g15 416 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Vvi14g15 416 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Vvi14g15 416 SMART xpgineu 147 219 IPR006086 GO:0004518
Vvi14g15 416 CDD H3TH_FEN1-Euk 222 289 - -
Vvi14g15 416 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Vvi14g15 416 PANTHER FLAP ENDONUCLEASE 1 1 381 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g15 K04799 - zju:107411672 717.227