Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1511 ATGGCCTTCCTTCCTACAGATTTCCTTTTTCAGACTCATCTAGAGGACCACCCTCCTTACACCTCTCACACTGGCCTCCCCTCATGTACACCTCAGGACTTCCATGGTGTTATCCCAGTCCTAATGAAGAGATCCATGTCTTTCTCTGGGGTTGATGGGTGTGAAGAAGTGCATGGAGATGATGACTTTTCGGATGATGGATCGCAGGCTGGGGAGAAGAAGAGGAGGCTCAACTTGGAACAGGTGAAGACCCTTGAGAAGAACTTTGAGTTGGGCAACAAGCTTGAGCCTGAGAGGAAAATGCAGCTGGCTAGGACCTTGGGTCTGCAACCCAGACAGATTGCTATATGGTTCCAAAACAGGAGGGCCAGGTGGAAAACCAAGCAACTAGAGAAAGACTATGACCTATTGAAGAGACAGTTCGAAGCAGTCAAGGCTGACAATGATGCTCTTCAGGCTCAGAACAAGAAGCTTCATGCAGAGTTATTGGCTCTAAAAAGTAGAGAACCCAAGGGAGTTGGACCCATAAACCTTAACAAAGAAACTGATCAGATTTCTTGGAGCAATGGAAGTGAGCACAGCTCCGGCATCAACCTAGACATCTCAAGAACAACTCTCATAAACAGCCCCGTCTCTTCCCAATTAAGCAGCAAGCAATTCTTCCCTTCATCCCTCAGGCCAGCAAGCATAACCCAACTCCTCCAAGGCTCCCCAAGATCAGACATCCACTGCCAAAAGATCGACCAAATTGTTCAAGACGAAAGCTTCTGCAACATATTCAGTGGCATCAGCGACCAGTCTGGATTATGGGCTTGGCCGGAGCAGGACCATTTCCATCAAAACCAGGCCTAG 852 48.24 MAFLPTDFLFQTHLEDHPPYTSHTGLPSCTPQDFHGVIPVLMKRSMSFSGVDGCEEVHGDDDFSDDGSQAGEKKRRLNLEQVKTLEKNFELGNKLEPERKMQLARTLGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKADNDALQAQNKKLHAELLALKSREPKGVGPINLNKETDQISWSNGSEHSSGINLDISRTTLINSPVSSQLSSKQFFPSSLRPASITQLLQGSPRSDIHCQKIDQIVQDESFCNIFSGISDQSGLWAWPEQDHFHQNQA* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29151427 29152873 - Vvi14g1511 Vvi14g1511 776578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1511 283 Pfam Homeodomain 73 126 IPR001356 GO:0003677
Vvi14g1511 283 Pfam Homeobox associated leucine zipper 128 168 IPR003106 GO:0006355|GO:0043565
Vvi14g1511 283 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Vvi14g1511 283 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Vvi14g1511 283 SMART HOX_1 71 132 IPR001356 GO:0003677
Vvi14g1511 283 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Vvi14g1511 283 CDD homeodomain 73 129 IPR001356 GO:0003677
Vvi14g1511 283 Coils Coil 120 168 - -
Vvi14g1511 283 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Vvi14g1511 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 279 - -
Vvi14g1511 283 Gene3D - 65 134 - -
Vvi14g1511 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 279 IPR045224 GO:0003700
Vvi14g1511 283 SUPERFAMILY Homeodomain-like 60 130 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g879 Vvi14g1511 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13977 PF00046 Homeodomain 8.50E-15 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1511 K09338 - vvi:100853126 580.096