Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1541 ATGAACAATATAGTAAAACATTTTTTTCCGGAAGCCGAGACAGAGACGCCGACGCAGATCCAACCCAGGAAGGGGTTGTCCTTGACGAACGGGGTGTTGAAGAGGCACCAACAACACCACCACCACCACCACCACCATTTCGCGGCGCCCCAGGTGGTGGTGGCGTACAAGGAATGTCTCAAGAACCACGCGGCTAGCTTGGGGGGCCACGCGTTGGATGGGTGTGGCGAGTTCATGCCCTCGCCGACCGCCACCTCAGCCGACCCGACCTCGCTGAAATGCGCTGCCTGCGGGTGCCACCGGAACTTCCACCGCCGAGAGCCGGACGACCCGCCCCCCACCACCCACAACGCCCCTCCCATTTCCTCTTCCCCCGCCTCGGGCGCCAACGGGCGGAAGCGGTTCCGTACCAAATTCAGCCAAGGGCAGAAGGAGAAGATGTTCGAATTCGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGAGACGAAGAGCTAGTGGCGGAGTTCTGCAATGAAGTTGGGGTCGACAAAGGAGTTCTAAAGGTGTGGATGCATAACAACAAGAACACCTTCGGCAAACGAGACGTCAATGGCAGCAGAACCATTCCCTTATACAAACACTTAAGAATATTTTCAGCATTTTTAGCAGCTTATTTTATAGAGCTTATGGTATCACCTTTTTTATTCAATCTCACTTTACTTTATTTAAGTGGATAA 717 53.84 MNNIVKHFFPEAETETPTQIQPRKGLSLTNGVLKRHQQHHHHHHHHFAAPQVVVAYKECLKNHAASLGGHALDGCGEFMPSPTATSADPTSLKCAACGCHRNFHRREPDDPPPTTHNAPPISSSPASGANGRKRFRTKFSQGQKEKMFEFAERVGWKMQKRDEELVAEFCNEVGVDKGVLKVWMHNNKNTFGKRDVNGSRTIPLYKHLRIFSAFLAAYFIELMVSPFLFNLTLLYLSG* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29448388 29462308 + Vvi14g1541 Vvi14g1541 776608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1541 238 Gene3D - 120 192 - -
Vvi14g1541 238 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 132 189 IPR006455 -
Vvi14g1541 238 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Vvi14g1541 238 MobiDBLite consensus disorder prediction 105 133 - -
Vvi14g1541 238 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Vvi14g1541 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
Vvi14g1541 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 113 - -
Vvi14g1541 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 116 197 - -
Vvi14g1541 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 116 197 - -
Vvi14g1541 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 9 113 - -
Vvi14g1541 238 SUPERFAMILY Homeodomain-like 120 193 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1541 - - - vvi:100245714 345.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g479 . 104 246 ZF-HD Transcription Factor Family AT5G65410 50.8 2.9e-44 176.0
Vvi18g479 . 55 242 ZF-HD Transcription Factor Family AT4G24660 53.0 1.6e-53 206.5
Vvi18g953 ECH 131 277 ZF-HD Transcription Factor Family AT4G24660 54.0 2.2e-45 179.5
Vvi18g1498 . 59 236 ZF-HD Transcription Factor Family AT4G24660 52.4 5.3e-44 174.9
Vvi4g980 ECH 89 282 ZF-HD Transcription Factor Family AT1G14440 51.0 1.1e-47 187.6
Vvi4g980 ECH 65 284 ZF-HD Transcription Factor Family AT2G18350 51.4 1.1e-50 197.2
Vvi14g1541 . 10 191 ZF-HD Transcription Factor Family AT3G28920 50.4 2.4e-55 213.0
Vvi14g1541 . 54 188 ZF-HD Transcription Factor Family AT1G69600 52.4 4.3e-44 175.3
Vvi18g479 . 55 242 ZF-HD Transcription Factor Family AT4G24660 53.0 1.6e-53 206.5
Vvi18g953 ECH 131 277 ZF-HD Transcription Factor Family AT4G24660 54.0 2.2e-45 179.5
Vvi18g1498 . 59 236 ZF-HD Transcription Factor Family AT4G24660 52.4 5.3e-44 174.9
Vvi4g980 ECH 65 284 ZF-HD Transcription Factor Family AT2G18350 51.4 1.1e-50 197.2
Vvi18g479 . 104 246 ZF-HD Transcription Factor Family AT5G65410 50.8 2.9e-44 176.0
Vvi14g1541 . 54 188 ZF-HD Transcription Factor Family AT1G69600 52.4 4.3e-44 175.3
Vvi4g980 ECH 89 282 ZF-HD Transcription Factor Family AT1G14440 51.0 1.1e-47 187.6
Vvi14g1541 . 10 191 ZF-HD Transcription Factor Family AT3G28920 50.4 2.4e-55 213.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13979 PF04770 ZF-HD_dimer 1.80E-29 No_clan Vvi TF