Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1541 ATGAACAATATAGTAAAACATTTTTTTCCGGAAGCCGAGACAGAGACGCCGACGCAGATCCAACCCAGGAAGGGGTTGTCCTTGACGAACGGGGTGTTGAAGAGGCACCAACAACACCACCACCACCACCACCACCATTTCGCGGCGCCCCAGGTGGTGGTGGCGTACAAGGAATGTCTCAAGAACCACGCGGCTAGCTTGGGGGGCCACGCGTTGGATGGGTGTGGCGAGTTCATGCCCTCGCCGACCGCCACCTCAGCCGACCCGACCTCGCTGAAATGCGCTGCCTGCGGGTGCCACCGGAACTTCCACCGCCGAGAGCCGGACGACCCGCCCCCCACCACCCACAACGCCCCTCCCATTTCCTCTTCCCCCGCCTCGGGCGCCAACGGGCGGAAGCGGTTCCGTACCAAATTCAGCCAAGGGCAGAAGGAGAAGATGTTCGAATTCGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGAGACGAAGAGCTAGTGGCGGAGTTCTGCAATGAAGTTGGGGTCGACAAAGGAGTTCTAAAGGTGTGGATGCATAACAACAAGAACACCTTCGGCAAACGAGACGTCAATGGCAGCAGAACCATTCCCTTATACAAACACTTAAGAATATTTTCAGCATTTTTAGCAGCTTATTTTATAGAGCTTATGGTATCACCTTTTTTATTCAATCTCACTTTACTTTATTTAAGTGGATAA 717 53.84 MNNIVKHFFPEAETETPTQIQPRKGLSLTNGVLKRHQQHHHHHHHHFAAPQVVVAYKECLKNHAASLGGHALDGCGEFMPSPTATSADPTSLKCAACGCHRNFHRREPDDPPPTTHNAPPISSSPASGANGRKRFRTKFSQGQKEKMFEFAERVGWKMQKRDEELVAEFCNEVGVDKGVLKVWMHNNKNTFGKRDVNGSRTIPLYKHLRIFSAFLAAYFIELMVSPFLFNLTLLYLSG* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29448388 29462308 + Vvi14g1541 Vvi14g1541 776608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1541 238 Gene3D - 120 192 - -
Vvi14g1541 238 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 132 189 IPR006455 -
Vvi14g1541 238 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Vvi14g1541 238 MobiDBLite consensus disorder prediction 105 133 - -
Vvi14g1541 238 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Vvi14g1541 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
Vvi14g1541 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 113 - -
Vvi14g1541 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 116 197 - -
Vvi14g1541 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 116 197 - -
Vvi14g1541 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 9 113 - -
Vvi14g1541 238 SUPERFAMILY Homeodomain-like 120 193 IPR009057 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13979 PF04770 ZF-HD_dimer 1.80E-29 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1541 - - vvi:100245714 345.125