Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1560 ATGGCGGAAGCAAAAGACCCCGCGATTAAGCTGTTTGGGAAGACGATTCCGCTGCCGGAGGTAGCGACGGCGGCGGCCGGAAACGACTCTCCTTCCGGTGCTACTGTTGGCGGCGGTGGTGAGGATTGGGTGGATCAGAATCGGGCGACGAACTCTTCGCCGGAGGAGGACTGCGTCAGGGCCGGAGAGGAAGGGCGGGAAGTGGACAAGGACACTTCAGGAGGAAAAGTTACTGACACTAGACAGGAAGATGGAGCTCGATCTTCTACGTCAGAAGAGTTTACAGATCCAGATGCAAATTCAGGGGTAAATGAAAATCCTAAAACACCATCAGCCGACAAAGAAACTGCAACATTAAAGTGTTCGAAGAATGAAGAGGAACAGAGTGAGACAAGTATCTCACAAGAGAAGACCCTGAAGAAACCAGACAAGATACTTCCATGCCCCCGCTGTAATAGTATGGACACCAAGTTCTGTTATTACAACAACTACAATGTCAACCAACCCCGACACTTCTGCAAGAACTGTCAGAGATATTGGACAGCCGGGGGAACCATGAGGAACGTGCCTGTGGGTGCAGGTCGTCGTAAGAACAAGAATTCAACCTCTCACTATCGGCACATAACTGTCTCTGAAGCTCTTCAGAGTGCTCGAACTGATGTTCCCAATGGAATCCACCACCCTGCATTGAAAACCAATGGCACCGTCCTGACTTTTGGCTCAGACACCCCCCTTTGTGAATCAATGGCTTCTGTTTTGAACCTTGCTGAAAAGACAATGAGAAACTGCACTCCAAATGGATTTCATAAACCAGAAAAGCTAAGAATTCCAGTTCCTTATGGAGATCAAGTGATGCGAAATTTACCCCCTCCTGCTTTCTGTCCTTCAGGTTTTCCTATGCCATTCTACCCTGCAGCTGCTTATTGGGGTTGTACAGTACCTGGAGCTTGGAATATCCCATGGGTTCCTCAGCCATCTGCGCTAAACCACACAGCCCCAAGCTCTGGTCCTAACTCTCCGACCTTAGGTAAGCATTCAAGGGACGAGAATATGCTTAAAGCAAGCAACTTTGGGGAAGAGGAACTACAGAAAGAGAACAATTCTGAGAGGTCTGATGAAAAGAATCACATAGCTGAAACCTCTCCAGTACTGCAAGCCAATCCTGCAGCATTGTCTAGGTCACTCAACTTCCATGAGAGCTCATAA 1206 48.51 MAEAKDPAIKLFGKTIPLPEVATAAAGNDSPSGATVGGGGEDWVDQNRATNSSPEEDCVRAGEEGREVDKDTSGGKVTDTRQEDGARSSTSEEFTDPDANSGVNENPKTPSADKETATLKCSKNEEEQSETSISQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITVSEALQSARTDVPNGIHHPALKTNGTVLTFGSDTPLCESMASVLNLAEKTMRNCTPNGFHKPEKLRIPVPYGDQVMRNLPPPAFCPSGFPMPFYPAAAYWGCTVPGAWNIPWVPQPSALNHTAPSSGPNSPTLGKHSRDENMLKASNFGEEELQKENNSERSDEKNHIAETSPVLQANPAALSRSLNFHESS* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29617352 29620701 + Vvi14g1560 Vvi14g1560 776627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1560 401 PANTHER CYCLIC DOF FACTOR 2 368 400 IPR045174 GO:0003700|GO:0006355
Vvi14g1560 401 PANTHER CYCLIC DOF FACTOR 2 1 267 IPR045174 GO:0003700|GO:0006355
Vvi14g1560 401 PANTHER CYCLIC DOF FACTOR 2 275 370 IPR045174 GO:0003700|GO:0006355
Vvi14g1560 401 MobiDBLite consensus disorder prediction 57 91 - -
Vvi14g1560 401 MobiDBLite consensus disorder prediction 328 345 - -
Vvi14g1560 401 MobiDBLite consensus disorder prediction 118 138 - -
Vvi14g1560 401 MobiDBLite consensus disorder prediction 346 377 - -
Vvi14g1560 401 ProSiteProfiles Zinc finger Dof-type profile. 146 200 IPR003851 GO:0003677|GO:0006355
Vvi14g1560 401 MobiDBLite consensus disorder prediction 328 401 - -
Vvi14g1560 401 Pfam Dof domain, zinc finger 143 200 IPR003851 GO:0003677|GO:0006355
Vvi14g1560 401 MobiDBLite consensus disorder prediction 23 138 - -
Vvi14g1560 401 ProSitePatterns Zinc finger Dof-type signature. 148 184 IPR003851 GO:0003677|GO:0006355
Vvi14g1560 401 MobiDBLite consensus disorder prediction 378 401 - -
Vvi14g1560 401 MobiDBLite consensus disorder prediction 92 117 - -
Vvi14g1560 401 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 368 400 - -
Vvi14g1560 401 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 267 - -
Vvi14g1560 401 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 275 370 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1560 Vvi17g423 ECH
Vvi14g1560 Vvi17g562 ECH
Vvi1g924 Vvi14g1560 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13983 PF02701 zf-Dof 2.30E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1560 - - vvi:100254372 738.028