Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1564 ATGGCTCTTCTCGGGTTTCTGTTGGTGGGCATTCTCTCAATGGTCTCAGCTGTGAATGGGTATTATGGTGGTTGGATTAATGCTCATGCCACCTTCTATGGAGGTGGTGATGCTTCTGGGACAATGGGTGGAGCTTGTGGATATGGAAACCTGTACAGCCAGGGGTATGGGACCAACACTGCAGCATTGAGCACAGCTCTTTTCAACAATGGCCTCAGCTGTGGCGCCTGTTTTGAGCTTAGGTGTGTGAATGATCCCCAGTGGTGCCTCCCTGGCACCATTGTCGTCACTGCCACTAACTTCTGCCCACCAGGAGGCTGGTGTGATCCTCCCCAGCAACACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCTCAGTACAGAGCTGGGATTGTCCCTGTCGCTTACAGAAGGGTTTCCTGCAGAAAATCAGGAGGCATCAGGTTCACCGTCAATGGCCATTCCTACTTCAATCTTGTCCTCGTCACCAACGTGGGGGGCGCCGGCGATGTCCATGCTGTTTCCATCAAGGGTTCAAGAACTGCCTGGCAGCCTATGTCAAGGAACTGGGGCCAAAACTGGCAAAGCAACTCCTACCTCAATGGCCAAAGCCTCTCCTTCAGAGTAGTCACCAGCGATGGCCGCGCCATAGTCTCCTACAATGTTGCCCCTGCAGGCTGGTCCTTTGGCCAGACCTACACTGGAGGCCAATTCCGCTAG 723 53.53 MALLGFLLVGILSMVSAVNGYYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPQQHFDLSQPVFQHIAQYRAGIVPVAYRRVSCRKSGGIRFTVNGHSYFNLVLVTNVGGAGDVHAVSIKGSRTAWQPMSRNWGQNWQSNSYLNGQSLSFRVVTSDGRAIVSYNVAPAGWSFGQTYTGGQFR* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29649246 29650896 - Vvi14g1564 Vvi14g1564 776631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1564 240 Gene3D - 146 239 IPR036749 -
Vvi14g1564 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Vvi14g1564 240 PANTHER EXPANSIN-A15 7 240 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Vvi14g1564 240 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Vvi14g1564 240 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Vvi14g1564 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Vvi14g1564 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Vvi14g1564 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Vvi14g1564 240 Gene3D - 10 143 IPR036908 -
Vvi14g1564 240 PANTHER EXPANSIN-A5 7 240 - -
Vvi14g1564 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Vvi14g1564 240 SMART dpbb_1 60 137 IPR007112 -
Vvi14g1564 240 SUPERFAMILY Barwin-like endoglucanases 24 165 IPR036908 -
Vvi14g1564 240 SUPERFAMILY PHL pollen allergen 144 236 IPR036749 -
Vvi14g1564 240 Pfam Lytic transglycolase 60 137 IPR009009 -
Vvi14g1564 240 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Vvi14g1564 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
Vvi14g1564 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1564 Vvi17g567 ECH
Vvi1g926 Vvi14g1564 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1564 - K20628 vvi:100244103 504.212