Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1590 ATGGCTGCAATCTCTCCAATCTCCGTTTCTCCCATCCCCAAAACCCTAATCCCTACCCGAACCCAAAAACTTCCTCCCACGACATCTTTCCGCTACCCAAAACCCTATTCCTTATCCATTTCCTCAATTAGGAGCCCCAAGACCCGAGCAGCCGACTTCTCTTCATTCTCCGCCATTGTGGGACAAGACCTGCACAGTGACGCAGATGAATCGATTGGCCTTGACACTCTCAAACGTTTCATTGATATCAATTTGGGTTGCTGGAACGGCTCTTTCTACCAATTTGATTCTCTGGGGAATTTGACCCAAAAAGTGAGTACGAAGCTTGCAGTGGGCTCTTATGGAGAAGATGAACTCATTAGTCTCATTCAAACGTTATACATAAAACAACCCCCATCAAGCACTTCATGTTCTGGTGATGATGATGAGCCAGCGTGGGCAGAGTACAAAATCAAAGAAATCAATTTGTTTACTGTGGACAAGTATCAACAGATTGGCTTTTTTTCCAATGAGAGGGCATTTGCTTTAAGATACCAGACAGCAGGCATGTTAGAGACTGTGTTAAGGCAAGGGGTTCTTGGTGAGGATGACAGTGGAGAAGAATCACCCAAAAATCTGAAGCTTCCGTCTCGCCGACCTTCTATTGTATGTGAGAATTGCCTTTATTCACAGGAGAGTGATCTGCGGGCTAGAGCATTCCACATCATGGACCCAAAAGGCATTTTAGACATGCTTGGTATTTTCCTTGAAGAAAGAGGCAATGGAAAATCTTTTCCTCCTTCCATTGACATTTCTAAGGACAAAACAAACAGGATTACACCATTTCTTGGTAAATGGAAAGGTCGTTCTGTGACAAAGCGCAGTGGTGTTTATGGATCAACAATTGCTGAAGCTAATACAGTTTCCTTACTTGAAATTAATGACAATGATCAGCTTGTCCAGGATATTTCTTCAACATCCACATCTGGAGGAGGAGATGTCACCACTAATGTACATTGGACCGGTGCCTTGTCAGGCAACTTGGCTACGTTTGAAGGGGGTTTCCAGATGACCTTACTGCCTGGTGGCATGTACATGGGATATCCATCTGATATCGCAAAGAGCGTGGCAGAATCCAAGTCATTCCACCTGGAGTTCTGTTGGCTTGAATCACCTGGGAAAAGGCAGAGACTGGTTCGCACTTATGACATGGAAGGCTTGGCTGTCTCCTCAACCCATTTTTCTGAGACCAGAGTGTGGAGGTGCATGAACCCACATTTAAGAACGTGGATCCCTACAAAGGCCAAAATGAAAACAAAAAGAGAGGGTGAACTTGGTAATGGGAGCGGCGCCACCAAGGGGACACCCGTGAGTAAAAAAACTAAAAAGTCTGCTGTGCTCCGTCGACTTTCCACAAAATCCATAAGAGAGAAGGGAGTTTTGGAGGGGTGGAAATTAAACCCTAACTATGGTGAACTGACGGAGCTCTCTATGGCTCAGAATGATACGTCCTCGTTTTCATCCAAAGTGGTGGCGCCCTCCCGCCCCACCATTGCTCTTCCCCCTCGCTCCTCCATGGACGCTTTCTTCTTCGCCGCCACCAGTCCCGGCCCTATGACCCTCGTCTCCAGCTTCTTCTCCGACAATTACCCCGACTCCGACTGCCGCTCCTTCTCTCAGCTCCTCGCCGGCGCCATGGCTTCCCCAGGCGCCAGGCCCACTTTGCTCTCCGGGTTCAGGCAGAACCGCCCCTTGAGTTTGGCGGTTGCTCGGTCGCCGATGTTTTCCATTCCGCCTGGGTTGAGCCCTTCAGGACTGCTCAATTCGCCGGGCTTCTTTTCTCCCCTCCAGAGCCCGTTTGGGATGTCCCATCAGCAAGCCTTGGCACAAGTTACAGCCCAGGCTGCATTATCCCAGTCTCATATGTTCATTCAAGCAGAGTATCAACCTTCTTCATTGGAAGCTCCTCAGGTGCCACCACTACCATCAGACCCTAAGAGTTCCATGACGGAGTCATCAGAAGTCTCTCATTCTGACAGGAAATCCCAACCTCCCTCTCTTGTTGTTGATAAGCCGGGTGATGATGGCTACAACTGGCGGAAATATGGACAGAAGCAGGGCAGCACAACCATGAATTTAAACAGGCCAAATGAAACTGTAAATGGGTCCAGTGACAGTGAGGAAGTGGGTGATGCTGAAACTAGAGTAAAAGAGGATGATGATGATGATGAACCAAATCCCAAGAGAAGGCAAGTTGCAGCACCTGCTGAGGTAGTATCATCACACAAGACAGTCACTGAACCAAGGATCATTGTGCAGACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGCAAGTATGGGCAAAAAGTGGTCAAAGGGAATCCTCATCCAAGGAGCTATTACAAATGCACTAGCCTGGGCTGTAATGTACGTAAACATGTTGAGAGGGCTTCAACAGATCCTAAAGCTGTGATAACAACATATGAGGGGAAACACAATCATGATGTCCCAGCAGCTAGAAACAGCAGCCACAACACTGCCAACAGTAATGCAACACAGCTAAAACAGCATAATGTGGTGGCTGAGAAGCGTGCCTTACTCAAAGAGATGGGTTTCAGAAACAAGGATAAAAAACCTGTTGCACTTTTACAACTGAAAGAAGAGCAGATTGCGGTGTAA 2670 47.53 MAAISPISVSPIPKTLIPTRTQKLPPTTSFRYPKPYSLSISSIRSPKTRAADFSSFSAIVGQDLHSDADESIGLDTLKRFIDINLGCWNGSFYQFDSLGNLTQKVSTKLAVGSYGEDELISLIQTLYIKQPPSSTSCSGDDDEPAWAEYKIKEINLFTVDKYQQIGFFSNERAFALRYQTAGMLETVLRQGVLGEDDSGEESPKNLKLPSRRPSIVCENCLYSQESDLRARAFHIMDPKGILDMLGIFLEERGNGKSFPPSIDISKDKTNRITPFLGKWKGRSVTKRSGVYGSTIAEANTVSLLEINDNDQLVQDISSTSTSGGGDVTTNVHWTGALSGNLATFEGGFQMTLLPGGMYMGYPSDIAKSVAESKSFHLEFCWLESPGKRQRLVRTYDMEGLAVSSTHFSETRVWRCMNPHLRTWIPTKAKMKTKREGELGNGSGATKGTPVSKKTKKSAVLRRLSTKSIREKGVLEGWKLNPNYGELTELSMAQNDTSSFSSKVVAPSRPTIALPPRSSMDAFFFAATSPGPMTLVSSFFSDNYPDSDCRSFSQLLAGAMASPGARPTLLSGFRQNRPLSLAVARSPMFSIPPGLSPSGLLNSPGFFSPLQSPFGMSHQQALAQVTAQAALSQSHMFIQAEYQPSSLEAPQVPPLPSDPKSSMTESSEVSHSDRKSQPPSLVVDKPGDDGYNWRKYGQKQGSTTMNLNRPNETVNGSSDSEEVGDAETRVKEDDDDDEPNPKRRQVAAPAEVVSSHKTVTEPRIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSLGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANSNATQLKQHNVVAEKRALLKEMGFRNKDKKPVALLQLKEEQIAV* 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29916399 29925511 - Vvi14g1590 Vvi14g1590 776657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1590 889 Pfam Domain of unknown function (DUF3598) 84 405 IPR022017 -
Vvi14g1590 889 SUPERFAMILY Lipocalins 269 411 IPR012674 -
Vvi14g1590 889 MobiDBLite consensus disorder prediction 430 456 - -
Vvi14g1590 889 PANTHER CELL DIVISION TOPOLOGICAL SPECIFICITY FACTOR HOMOLOG, CHLOROPLASTIC 1 412 IPR005527 GO:0032955|GO:0051301
Vvi14g1590 889 SMART WRKY_cls 774 833 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1590 889 MobiDBLite consensus disorder prediction 695 720 - -
Vvi14g1590 889 Gene3D - 76 256 IPR012674 -
Vvi14g1590 889 Pfam WRKY DNA -binding domain 775 831 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1590 889 SUPERFAMILY WRKY DNA-binding domain 766 834 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g1590 889 PANTHER NMDA RECEPTOR SUBUNIT EPSILON-1, PUTATIVE (DUF3598)-RELATED 1 412 - -
Vvi14g1590 889 SUPERFAMILY Lipocalins 76 254 IPR012674 -
Vvi14g1590 889 Gene3D - 268 412 IPR012674 -
Vvi14g1590 889 Gene3D WRKY domain 759 835 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g1590 889 ProSiteProfiles WRKY domain profile. 769 834 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1590 889 MobiDBLite consensus disorder prediction 645 754 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13988 PF12204 DUF3598 5.40E-14 CL0116 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1590 - - vvi:100262941 819.69