Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1593 ATGTGCGCCGTGGTGCTGATGTTGCCGGACGTGTCGGCCACGCGGTGGACCGTCGGAGGGAACCAGGGCTGGAGCACCAACGTCAACTACACGGTCTGGGCCAAGGACAAGCACTTCTACAATGGCGACTGGCTCTTTTTTGTGTATGATAGGAACCAGATGAATGTGTTGGAGGTAAATGAGACAAACTATGAGTCATGCAATTCCGATCATCCGCTTCACAATTGGACTACAGGTGCTGGAAGGGATGTTGTTCCTCTTAACGTCACCCGGAAATATTATTTCCTCAGTGGCAAGGGGTTCTGCTATAGTGGAATGAAGATAGCTATCAATGTTGAAAACCCACCGCCCCCTCCCTCAGCTTCACCAATAAAAGAATCGAACGACTCTCCAAGTTCTAATTACAGAGGCCAGATTGTTGTACCAGCCGTTTTTGCCATTGCCGCAGTGTGGGACTCATTCCTCCGTCTCTACTGGTAA 480 50.0 MCAVVLMLPDVSATRWTVGGNQGWSTNVNYTVWAKDKHFYNGDWLFFVYDRNQMNVLEVNETNYESCNSDHPLHNWTTGAGRDVVPLNVTRKYYFLSGKGFCYSGMKIAINVENPPPPPSASPIKESNDSPSSNYRGQIVVPAVFAIAAVWDSFLRLYW* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29934780 29936781 - Vvi14g1593 Vvi14g1593 776660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1593 159 Gene3D - 12 115 IPR008972 -
Vvi14g1593 159 PANTHER BLUE COPPER PROTEIN 1 150 IPR039391 GO:0009055
Vvi14g1593 159 ProSiteProfiles Phytocyanin domain profile. 14 114 IPR003245 GO:0009055
Vvi14g1593 159 SUPERFAMILY Cupredoxins 13 112 IPR008972 -
Vvi14g1593 159 Pfam Plastocyanin-like domain 24 106 IPR003245 GO:0009055
Vvi14g1593 159 PANTHER LAMIN-LIKE PROTEIN 1 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1593 - - - vvi:100243953 332.028
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1593 . . Bda01g01224 . Bpe02g01443 Bpe14g00162 . . . Cmo11g01201 . . Car11g00976 Car14g00951 . . . . . . . . . . Cla10g01479 Cam10g1524 Cec10g1562 Cco10g1540 Clacu10g1537 Cmu10g2301 Cre10g1684 . . . Cone16ag0481 . . . . Blo17g00375 Blo18g00400 . . . . . . . . . . . . . Cpe04g00182 . . . . . . . . . . . . . . . . Csa03g03793 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g376 . 10 131 Phytocyanin Superfamily AT1G48940 58.5 5.2e-39 157.9
Vvi14g1593 . 3 146 Phytocyanin Superfamily AT3G01070 52.7 1.6e-37 152.9
Vvi4g584 . 14 174 Phytocyanin Superfamily AT2G25060 54.0 1.5e-41 166.4
Vvi14g1593 . 8 158 Phytocyanin Superfamily AT5G15350 52.0 2.9e-47 185.3
Vvi4g584 . 25 177 Phytocyanin Superfamily AT4G31840 52.9 2.5e-41 165.6
Vvi17g376 . 1 131 Phytocyanin Superfamily AT3G18590 58.8 2.5e-39 159.1
Vvi17g376 . 1 131 Phytocyanin Superfamily AT3G18590 58.8 2.5e-39 159.1
Vvi17g376 . 10 131 Phytocyanin Superfamily AT1G48940 58.5 5.2e-39 157.9
Vvi2g224 . 6 151 Phytocyanin Superfamily AT1G64640 60.5 4.3e-39 158.3
Vvi4g584 . 14 159 Phytocyanin Superfamily AT5G25090 52.9 3.5e-38 155.2
Vvi4g584 . 14 174 Phytocyanin Superfamily AT2G25060 54.0 1.5e-41 166.4
Vvi4g584 . 25 177 Phytocyanin Superfamily AT4G31840 52.9 2.5e-41 165.6
Vvi14g1593 . 3 146 Phytocyanin Superfamily AT3G01070 52.7 1.6e-37 152.9
Vvi14g1593 . 8 158 Phytocyanin Superfamily AT5G15350 52.0 2.9e-47 185.3
Vvi6g956 . 6 189 Phytocyanin Superfamily AT1G08500 59.2 5.8e-59 224.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38