Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1600 ATGGCCACGAAGAAACCCCAATTGTCTCCGGACGAAATTGAGGATATAATTCTGGGGAAAATTTTCTTGGTTTCGTTGAATGATTCCATGGAAAGCGATTCAAGAATTGTATACTTGGAGATGACTGCAGCTGAAATTCTGAGTGAGGGCAGGCCGTTGAAGCTTTCACGGGATTTGATGGAAAGGGTGTTGATCGATCGGCTTTCCGGGCACTTCCCTGGTGCCGAGCCTCCGTTTCCGTACCTAATCGGGTGTTATCGGCGAGCATGTGATGAGGGAAAGAAGATTGCATCGAAGAAAGACAAGAATTTGAGGTCTGAACTGGAATTGGTAGTGAAGCAAGCAAAGAAATTGGCGGTTTCCTATTGCCGGATTCATTTAGGCAATCCGGATATGTTTTCCAATTGGGATTCCGGTGCAAATGATTCGGCAGTGTCGCCACTGTTGCCGTTGATTTTCTCCGAAGTTTCTAGCAGTGTTGATGGATTTGGAGGGAGTAGCATTGGGTGCCCACCTGGGTTCTTGGAGGAGTTTTTCCGGGACTCAGATTTCGATAGTTTGGACCCGATTTTCAAAGGGTTGTACGAGAACTTGAGAAGTATAGTGCTGAAAGTGTCTGCACTGGGGAATTTTCAGCAGCCTTTAAGGGCTTTCTTGTATTTGGTCAGGTTTCCATTTGGTGCCAAATCACTGGTGAGTCACCGATGGTGGATTCCCCAAGGCGCGTATATGAATGGGCGGGTTATTGAGATGACCAGCATTTTGGGTCCCTTCTTTCATGTCAGTGCTTTGCCGGATCGGGGTATTTTCCAGGGTCAGCCTGATGTTGGTCAGCAATGCTTCTCTGAGGCATCTACTCGTCGTCCAGCTGATTTATTGTCTTCATTCACCACTATCAAGACAGTCATGAATGGCTTATATGATGGCTTAGCCGAAGTCCTTCTCTCTCTCCTTAAAAATGCTGATACACGTGAGAGTGTTCTGAAGTATCTTGCAGAGGTGATCAATAAAAACTCATCAAGGGCTCATATACAGGTTGATCCCCTATCTTGTGCAAGTTCAGGCATGTTTGTCAGTCTTAGTGCAGTCATGCTTCGACTCTGTGAGCCATTCTTAGATTTAACAAAAATGGACAAAATTGATCCCAAATATGTATTTTACAGTACCCGATTGGATCTGAGAGGATTGACTGCTCTACATGCATCATCTGAGGAAGTTGCTGAATGGATTAATAAAGATAGTCCTGGGGGAACGGAGGGCTCTAGGCAATATAGTGATGGCGAAAGCCGCTTGCTACAATCTCAAGAAGCCACCAGTTCTGGCAGTAATGCTCATGGACCTTCTTTCCTCCATAATGCCAAGCCAGTGCCAATTTCTAGTGAAAAAGCTAAATACTCATTTATCTGTGAATGCTTCTTTATGACTGCAAGAGTACTGAACTTGGGCCTGCTAAAAGCATTTTCTGACTTTAAGCATCTAGTTCAGGATATTTCAAGATGTGAAGATTCCCTTGCCACGTTGAAGGCCGTGCAGGGACAGGCACCTTCTCCAGAACTAGAGGCGGATATAGCTCGCTTTGAGAAAGAAATTGAGTTGTATTCACAGGAAAAGCTATGTTATGAAGCTCAGATACTCAGGGATGGGACTCTTCTTCAGCACGCACTGTCTTTCTACAGGTTAATGGTGGTTTGGTTGGTTCGCCTCATAGGTGGTTTTAAGATGCCTCTACCATCAACTTGCCCTATGGAATTTGCTTGTATGCCTGAGCATTTTGTGGAAGATGCCATGGAATTGCTTATTTTTGCTTCTCGAATTCCTAAAGCTTTGGATGGGGTCTTGCTGGATGATTTTATGAACTTCATTATCATGTTCATGGCAAGTCCAAATTTTATAAGAAACCCATATCTGAGGGCAAAAATGGTTGAAGTCCTGAACTGCTGGATGCCCCGTAGGAGTGGTTCATCTGCTACAACTACTCTCTTTGAAGGGCACCGATTGTCTCTTGAGTATCTTGTGAGAAATCTGCTGAAGCTTTATGTTGATATTGAGTTCACGGGTTCTCACACACAGTTCTATGACAAGTTTAACATTCGTCATAATATTGCTGAACTTCTAGAATACCTGTGGCAGGTCCCAAGTCACCGTAATGCTTGGAGACAGATTGCTAAAGAAGAAGAAAAGGGTGTCTATCTGAATTTCTTGAACTTCCTGATCAATGATAGCATCTATCTCCTTGATGAGAGTCTTAACAAAATTCTTGAACTCAAAGAGTTGGAAGCTGAGATGTCTAACACTGTGGAATGGGAGCGCAGACCAGCTACAGAGAGGCAGGAGAGAACGCGACTATTCCACTCCCAAGAGAATATTATCCGGATTGATATGAAGTTGGCAAATGAAGATGTGAGTATGCTGGCATTTACCTCGGAGCAGATTACAGTTCCTTTCCTACTTCCAGAGATGGTTGAAAGGGTGGCCAATATGCTTAATTACTTTTTGTTACAACTTGTGGGGCCCCAAAGGAAATCTCTTAGCCTAAAAGACCCCGAAAAGTACGAGTTCCGCCCAAAACAACTACTTAAGCAGATCGTCCACATATATGTTCATCTGGCAAGGGGTGATACACAGAAGATTTTCCCAACTGCAATCTCAAAGGATGGGCGATCTTACAATGAGCAGTTATTTAGTGCTGCTGCAGATGTCCTTAGAAGAATTGGTGAGGATGGAAGGATTATACAAGAATTTTCTGAGCTTGGTGCTAGAGCCAAAGTAGCAGCTTCTGAGGCCATGGACGCCGAAGCTGCCCTTGGAGAGATACCTGATGAATTCCTTGATCCAATTCAATACACATTAATGAAGGACCCAGTGATCTTACCTTCTTCAAGAATCACAGTAGACCGGCCTGTCATTCAAAGGCATCTTCTAAGCGATAATACTGACCCATTTAATCGATCCCATCTGACTTCGGATATGCTCATCCCAAACATTGAACTGAAGGCGAGAATAGAAGAATTCATCAGATCTCAAGAATTAAAGAAGCACGCAGAAGGCTTAACCATGCAACAAAGCAAAGCCGCAATGCAAACTACCACAGGTGAAATGACTTTGATTGATTAG 3114 43.83 MATKKPQLSPDEIEDIILGKIFLVSLNDSMESDSRIVYLEMTAAEILSEGRPLKLSRDLMERVLIDRLSGHFPGAEPPFPYLIGCYRRACDEGKKIASKKDKNLRSELELVVKQAKKLAVSYCRIHLGNPDMFSNWDSGANDSAVSPLLPLIFSEVSSSVDGFGGSSIGCPPGFLEEFFRDSDFDSLDPIFKGLYENLRSIVLKVSALGNFQQPLRAFLYLVRFPFGAKSLVSHRWWIPQGAYMNGRVIEMTSILGPFFHVSALPDRGIFQGQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNGLYDGLAEVLLSLLKNADTRESVLKYLAEVINKNSSRAHIQVDPLSCASSGMFVSLSAVMLRLCEPFLDLTKMDKIDPKYVFYSTRLDLRGLTALHASSEEVAEWINKDSPGGTEGSRQYSDGESRLLQSQEATSSGSNAHGPSFLHNAKPVPISSEKAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDSLATLKAVQGQAPSPELEADIARFEKEIELYSQEKLCYEAQILRDGTLLQHALSFYRLMVVWLVRLIGGFKMPLPSTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPNFIRNPYLRAKMVEVLNCWMPRRSGSSATTTLFEGHRLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPATERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVHIYVHLARGDTQKIFPTAISKDGRSYNEQLFSAAADVLRRIGEDGRIIQEFSELGARAKVAASEAMDAEAALGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDNTDPFNRSHLTSDMLIPNIELKARIEEFIRSQELKKHAEGLTMQQSKAAMQTTTGEMTLID* 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29974610 29983171 - Vvi14g1600 Vvi14g1600 776667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1600 1037 MobiDBLite consensus disorder prediction 416 447 - -
Vvi14g1600 1037 PANTHER - 1 1015 - -
Vvi14g1600 1037 SMART Ubox_2 941 1004 IPR003613 GO:0004842|GO:0016567
Vvi14g1600 1037 MobiDBLite consensus disorder prediction 410 448 - -
Vvi14g1600 1037 PANTHER UBIQUITINATION FACTOR E4 1 1015 IPR045132 GO:0000151|GO:0030433|GO:0034450
Vvi14g1600 1037 SUPERFAMILY RING/U-box 930 1008 - -
Vvi14g1600 1037 Coils Coil 516 543 - -
Vvi14g1600 1037 ProSiteProfiles U-box domain profile. 937 1011 IPR003613 GO:0004842|GO:0016567
Vvi14g1600 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 937 1016 IPR013083 -
Vvi14g1600 1037 Pfam U-box domain 938 1008 IPR003613 GO:0004842|GO:0016567
Vvi14g1600 1037 CDD RING-Ubox_UBE4A 940 1008 - -
Vvi14g1600 1037 Pfam Ubiquitin elongating factor core 255 921 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1600 K10597 - vvi:100250848 2033.07