Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1602 ATGGGGTTGACATTTTCAGAGCAGGGACCAGGGAGGTTTGCAAGCAACAGTTTGCTCCAATACCAACTGATCAATTATCTGACCAGAACTTTGTACATTCGCAACTTGGTATCCAAGCAGAGGAGGAGAATGCTTGTTGGTGGTTATGATCTTGACATGTCATTCATCACAGGCCGTTTACTGGCCATGTCTTTCCCTGCAGAGCGTATGCAAGCCATATTTCGTAATCCTCTCTGGCAAGTGAAGGATGTGCTGGACATGAGACATAATGGGCATTATAAGGTCTATAATCTCCGTGTCGAAGAAAGTTATGATCCATTGCATTTTCATGGTCGTGTGGAGACGTTTCCATTTGATGACCACCACATTCCACCTCTGCAGACTATCAAGCTCTTTTGCAAAAACGTGCATTCATGGCTATCATCTCATCCAAAGAACATTGCTGTTGTGCACTGCATGGCTGGCAAAGGTAGGACAGGCTTAACGGTATGTGCCTATTTAGTTTACACTGGCATGTCAGCAGAGGAAGCTCTTAAGCTGCATGCAGATAAACGAACCACCAACAATGAAGGAGTGTCAATTCCAAGCCAACGCCGTTATGTGGGGTACTGGGAAAGTTTACTTGCTTTCCACAAGGGGAGTTGA 645 45.27 MGLTFSEQGPGRFASNSLLQYQLINYLTRTLYIRNLVSKQRRRMLVGGYDLDMSFITGRLLAMSFPAERMQAIFRNPLWQVKDVLDMRHNGHYKVYNLRVEESYDPLHFHGRVETFPFDDHHIPPLQTIKLFCKNVHSWLSSHPKNIAVVHCMAGKGRTGLTVCAYLVYTGMSAEEALKLHADKRTTNNEGVSIPSQRRYVGYWESLLAFHKGS* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29985885 29991984 - Vvi14g1602 Vvi14g1602 776669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1602 214 ProSiteProfiles Phosphatase tensin-type domain profile. 42 211 IPR029023 -
Vvi14g1602 214 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 208 IPR029021 -
Vvi14g1602 214 Gene3D Protein tyrosine phosphatase superfamily 29 213 IPR029021 -
Vvi14g1602 214 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 130 185 IPR000387 GO:0016311|GO:0016791
Vvi14g1602 214 CDD PTP_PTEN 52 207 IPR045101 GO:0016791
Vvi14g1602 214 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 211 - -
Vvi14g1602 214 PANTHER BNAC03G16750D PROTEIN 1 211 - -
Vvi14g1602 214 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Vvi14g1602 214 Pfam Tyrosine phosphatase family 140 176 IPR026893 GO:0004721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1602 K01110 - vvi:100254134 438.728