Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1603 ATGGACGCTCCACCCAACTTCCAAATCTCCCTTCCAAGGTGGATTGGAATATTCCGGCGCCGGAAAGCAAACTCCGATGAAAACTACGAAGAAGACGACGGCCCCATCTCCAATTCCATTGAATGCTACGCCTGTACTCAGGTGGGAGTGCCGGTGTTCCACTCCACCAGTTGTGACCAGGCCCACCAGCCGGAGTGGGAGGCCTCAGCCGGTTCTTCCTTGATTCCAATTCAGGACAGGAGGACCGGGAAGGCCCGGTCCAACGGCCGCCCCTCGGGGCCTTTCGGGCCGGTCCTGGACCCGAGGACCAAGCCCGTGCAGAGGTGGAACCGCGCGTTCCTACTCGTCCGTGGGATGTCCCTGGCAGTGGATCCCCTCTTCTTTTACGTCATATCCATTGGCGGCGAGGGGGGACCGTGCCTGTACATGGACGGTGGGCTGGCGGCCATCGTGACGGTGCTGCGGACGTGTGTGGACGCTGTGCACTTGTTTCACTTGTGGCTGCAGTTCAGGCTGGCGTACGTGTCTAGGGAGTCTCTGGTGGTGGGTTGTGGTAAACTCGTGTGGGACGCACGTGCCATTGCCTCCCACTACGTCAGGTCTCTCAAAGGCTTCTGGTTCGATCTCTTCGTCATCCTCCCTGTTCCTCAGGTTGTGTTTTGGTTGGTTGTACCGAAATTAATCAAACAAGAGGAGATAAAGCTGATGATGACAATACTTCTGCTGATGTTCTTGTTCCAGTTCCTTCCCAAGGTCTACCATAGTGTTTGCTTGATGAGAAGAATGCAGAAGGTCATGGGTTATATATTTGGCACTATCTGGTGGCGTTTTGTTCTTAATCTCATTGCCTACTTGATTGCTTCTCATGTTGCTGGAGGATGCTGGTATGTTCTTGCAATACAACGGGTAGCATCATGTCTCCGTCAACAGTGTGACAGAAATAGGTGCAATTTCTCTTTGTCTTGCTCAAGGGAGGTTTGTTACCAGTTTCTGTTACCGGCAGGCACAGTAGGAAATCCATGTGTAGATAACTCTACAATATTGACCAGGAAGCCGCTGTGCCTGGATGTCAATGGGCCGTTTGAATATGGGATCTATGACATTGCTCTTCCTGTTATTTCTAGTCAATCCATTGCTGTTAAGATCCTTTATCCCATATTCTGGGGTCTGCTGAACCTCAGCACTTTTGCTAATGAACTTGCACCCACAAGTAACTGGCTAGAAGTGATATTCAGTATATGCATTGTGCTCAGTGGCTTACTGCTCTTTACTTTATTGATCGGAAATATTCAGGTATTTTTACAGTCCGTCATGGCAAAGAAGAGAAAAATGCAGCTGAGATACCGAGAAATAGAATGGTGGATGAGGCGGAGACAGTTGCCATCTCATCTGAGGCAAAGGGTTCGCCGTTTTGAACGCCATAGTTGGGCAGCCATGGGGGGTGAAGATGAGATGGAATTGATCCAGGACTTGCCTGAAGGGCTTAGACGGGACATTAAGCGCCATCTTTGCCTAGATCTTATTAAAAAGGTACCTCTGTTCCAGAGTTTGGATGATCTTATCCTTGACAACATCTGTGACAGGGTTAAGCCCCTGGTCTTCTGCAAAGATGAAAAGATTATTAGAGAAGGAGACCCAGTGCATCGCATGGTGTTCATCACCCGTGGCCATATAAAGAGTAGCCAAAACCTCAGCAAAGGCATGGTGGCCACAAGCCTGCTTGAACCTGGAGACTTTTTAGGCGATGAGCTCCTGTCTTGGTGCATTCGCCGCCCATTCATAGACAGGCATCCAGCCTCATCTGCCACATTTGTTTGTGTGGAATCAACAGAAGCATTCGGTCTAGATGCAAACCATCTGCGGTTCATCACAGAGCACTTCCGCTACAAGTTTGCGAATGAAAGGCTTAAGCGAACAGCAAGATACTACTCATCCAACTGGCGAACATGGGCAGCAGTGAATATACAATTGGCTTGGCGTCGCTACATAATCAGGACCAGGGGAGCTCCAGCCATTCCTGTGATTGAAAATGGAGGTAGTGATCGTCGGCTCAGACAGTGTGCTGCAATGTTCATGTCACTTAGGCCTCATGACCACCTGGAATAA 2106 49.86 MDAPPNFQISLPRWIGIFRRRKANSDENYEEDDGPISNSIECYACTQVGVPVFHSTSCDQAHQPEWEASAGSSLIPIQDRRTGKARSNGRPSGPFGPVLDPRTKPVQRWNRAFLLVRGMSLAVDPLFFYVISIGGEGGPCLYMDGGLAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDARAIASHYVRSLKGFWFDLFVILPVPQVVFWLVVPKLIKQEEIKLMMTILLLMFLFQFLPKVYHSVCLMRRMQKVMGYIFGTIWWRFVLNLIAYLIASHVAGGCWYVLAIQRVASCLRQQCDRNRCNFSLSCSREVCYQFLLPAGTVGNPCVDNSTILTRKPLCLDVNGPFEYGIYDIALPVISSQSIAVKILYPIFWGLLNLSTFANELAPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLQSVMAKKRKMQLRYREIEWWMRRRQLPSHLRQRVRRFERHSWAAMGGEDEMELIQDLPEGLRRDIKRHLCLDLIKKVPLFQSLDDLILDNICDRVKPLVFCKDEKIIREGDPVHRMVFITRGHIKSSQNLSKGMVATSLLEPGDFLGDELLSWCIRRPFIDRHPASSATFVCVESTEAFGLDANHLRFITEHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAWRRYIIRTRGAPAIPVIENGGSDRRLRQCAAMFMSLRPHDHLE* 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 29993041 29998094 - Vvi14g1603 Vvi14g1603 776670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1603 701 Pfam Cyclic nucleotide-binding domain 533 621 IPR000595 -
Vvi14g1603 701 Gene3D Helix hairpin bin 439 504 - -
Vvi14g1603 701 ProSiteProfiles cAMP/cGMP binding motif profile. 513 623 IPR000595 -
Vvi14g1603 701 SUPERFAMILY cAMP-binding domain-like 440 627 IPR018490 -
Vvi14g1603 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 25 701 - -
Vvi14g1603 701 Pfam Ion transport protein 109 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi14g1603 701 Gene3D Jelly Rolls 511 629 IPR014710 -
Vvi14g1603 701 SUPERFAMILY Voltage-gated potassium channels 101 435 - -
Vvi14g1603 701 CDD CAP_ED 513 623 IPR000595 -
Vvi14g1603 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 701 - -
Vvi14g1603 701 SMART cnmp_10 513 639 IPR000595 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1603 K05391 - vvi:100245706 1412.51