Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g169 ATGGGGCATTTTTCATCCATGTTCAATGGATGGGCGAGGTCCTTTTCTATCAAAAAAGCGAGCAGTTCAGGGAATTGTGGTGGAAGAGAGGCTGTTGAAGTAATGGCAAAGGAGGCGAAGAAGAATGATTTGATACTGCACTCTTCCGGGTTTGTTAATGTCAATGGTTCAAACAATTTCACTTCCCTTTACTCAAAGCGAGGCGAAAAGGGTGTGAATCAGGATTGCTTCATTGTGTGGGAGGAATTTGGAGGGCAAGAGGATATGCTCTTTTGTGGGGTTTTTGATGGTCACGGGCCATGGGGTCATTATGTGGCAAAAAGGGTCAGAGAATCAATGCCATCTTCTTTGTTGTGCAATTGGCAGGAAACCCTTGCTGAAGCCTCACTTGACCCAGATTTTGACTTGCAAGCAGAAAAAAAGCTTCACCGGTTTAATATATGGAAGCATTCCTACTTAAAAACTTGTGCTGCTATTGATCAAGAGCTTGAGCATCATCGTCGAATCGATTCCTTCAACAGTGGGACAACAGCACTTACCATTGTTAGACAGGGGGAAAGCATTTTTGTAGCAAATGTCGGTGACTCACGTGCTGTATTGGCTACCATGTCTGATGATGGCAACTTGGAACCAGTTCAACTTACTATTGATTTCAAACCGAATCTACCTCAGGAGGCTGAGCGGATAATTCAGTGCAAAGGGCGAGTGTTCTGTTTAGGCGATGAGCCAGGAGTGCACAGGGTCTGGCTTCCCCATGAGGAATCACCAGGACTGGCTATGTCTAGAGCCTTTGGGGATTACTGTGTGAAGGATTTTGGACTCATTTCTGTGCCTGAAGTGACACAGAGGAACATAACCAGCAGAGACCAATTTGTTGTGCTTGCAACTGATGGGGTCTGGGATGTTGTCTCAAATCAAGAAGCAGTGCAAATAGTATCTTCAACACCCAACAGAGCGAAGTCAGCCAAGCGTCTAGTTGAGTGTGCAGCCCGTGCTTGGAAACGCAAGAGGCGGGGAATTGCAGTGGATGACATCTCAGCTGTTTGTCTCTTCTTCCACCCTTGTTCCATTCAGCAAGTTACTGTACCAAAAGAGTCATGA 1101 45.87 MGHFSSMFNGWARSFSIKKASSSGNCGGREAVEVMAKEAKKNDLILHSSGFVNVNGSNNFTSLYSKRGEKGVNQDCFIVWEEFGGQEDMLFCGVFDGHGPWGHYVAKRVRESMPSSLLCNWQETLAEASLDPDFDLQAEKKLHRFNIWKHSYLKTCAAIDQELEHHRRIDSFNSGTTALTIVRQGESIFVANVGDSRAVLATMSDDGNLEPVQLTIDFKPNLPQEAERIIQCKGRVFCLGDEPGVHRVWLPHEESPGLAMSRAFGDYCVKDFGLISVPEVTQRNITSRDQFVVLATDGVWDVVSNQEAVQIVSSTPNRAKSAKRLVECAARAWKRKRRGIAVDDISAVCLFFHPCSIQQVTVPKES* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1654893 1659347 + Vvi14g169 Vvi14g169 775236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g169 366 CDD PP2Cc 62 352 IPR001932 -
Vvi14g169 366 Pfam Protein phosphatase 2C 84 325 IPR001932 -
Vvi14g169 366 PANTHER ALPHABET, ISOFORM E-RELATED 1 359 - -
Vvi14g169 366 SMART PP2C_4 52 350 IPR001932 -
Vvi14g169 366 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Vvi14g169 366 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 359 - -
Vvi14g169 366 Gene3D - 53 354 IPR036457 -
Vvi14g169 366 SUPERFAMILY PP2C-like 57 354 IPR036457 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g169 - - vvi:100251160 749.199