Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g194 ATGGCGGTGAAGAACAGGGCGGTGATGATTTTGCAACTGTTTGTTTTGGAATTTCTTTTTGGAACAGCATTAGCTGCTGAAAATTCACAGAAGCTTGGGACAGTTATCGGTATCGATCTCGGAACTACTTATTCTTGCGTGGGTGTGTATCGGAACGGTCACGTAGAGATTATAGCGAACGATCAAGGCAACAGAATCACCCCATCATGGGTTTCATTCACTAACACCGAGCGTTTGATTGGAGAAGCCGCGAAAAATCAAGCCGCTCTCAATCCAGAACGCACCATCTTTGATGTTAAGCGGCTTATAGGAAGAAAGTTTGATGATCCGGAGGTTCAGAGAGATATAAAGTTCTTGCCTTATAAGGTAGTGAACAAAGAAGGGAAGCCATATATACAAGTGACGATCAGAGATGGTGAGATTAAAGTATTTAGCCCTGAGGAGATCAGTGCTATGATACTGGGGAAAATGAAGGAGACAGCAGAGGCATATCTGGGAAAGAAAATCAAAGATGCTGTCGTCACTGTTCCAGCTTATTTCAATGATGCACAGAGGCAGGCAACCAAGGATGCAGGCATCATCGCTGGGCTCAATGTGGCTCGGATAATAAACGAACCGACCGCTGCAGCTATTGCTTATGGGCTAGACAAGAAAGCAGAGAAGAATATTCTGGTCTATGATCTTGGTGGTGGTACGTTTGATGTTAGCATCTTGGCTATTGATAATGGTGTTTTCGAGGTTCTTGCTACCAGTGGGGACACCCACTTGGGAGGAGAAGACTTTGATCACAGAGTGATGGACTATTTCATTAAGCTGATTAAGAAGAAATACGACAAAGATATCAGCAAAGATAACAAGGCCCTTGGAAAGCTCCGTAGGGAATGTGAGAGGGCGAAGCGAGCACTGAGCAGCCAGCATCAAGTTCGGGTTGAGATTGAGTCCCTTTTTGATGGTATCGACTTCTCAGAGCCATTAACAAGGGCAAGGTTCGAAGAGCTGAATATGGACTTGTTTAAGAAGACAATGGGGCCTGTGAAGAAGGCTTTGGAGGATGCTGGCCTGAAAAAGACCGATATCAATGAAATTGTGCTTGTTGGAGGGAGTACTCGCATTCCCAAGATCCAACAGATGTTGAAGGAAATGTTTGATGGAAAAGAGCCATGTAAGGGAGTCAACCCAGATGAGGCTGTAGCCTATGGGGCTGCAGTCCAGGGAGGAATTCTGAGCGGTGAAGGAGGGGAAGAAACTGGAGGCATACTTCTGCTAGATGTTGCTCCCCTCAGTCTGGGAATCGAAACAGTTGGTGGGGTGATGACAAAACTGATTCCCAGGAACACCGTTATCCCCACCAAGAAATCTCAGATTTTCACTACCTACCAGGATCAGCAACCCACAGTATCAATCAAGGTCTATGAAGGTGAAAGAAGCTTGACAAAAGACTGTCGTGAGCTGGGGAGGTTCGAGCTCTCTGGAATTCCACCTGCTCCAAGGGGAGTGCCCCAGATCGAGGTCACCTTCGAGGTGGACGCCAATGGCATACTACACGAGTTTGCAGAAGAGGATAGGCAGGAGAAGATTGAGGCCGCATTGAAGGAGGCGCTGGACTGGCTGGACGATAACCAAAACGCAGACAAAGATGAATATAATGAGAAATTGAGAGGAGTTGAGGCAGTATGTAATCCAGTTATAAAGCAGGTTTATGAGGAGTGGTGGGGCTTCTTCCAGTTCTGA 1731 46.45 MAVKNRAVMILQLFVLEFLFGTALAAENSQKLGTVIGIDLGTTYSCVGVYRNGHVEIIANDQGNRITPSWVSFTNTERLIGEAAKNQAALNPERTIFDVKRLIGRKFDDPEVQRDIKFLPYKVVNKEGKPYIQVTIRDGEIKVFSPEEISAMILGKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKAEKNILVYDLGGGTFDVSILAIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYDKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDINEIVLVGGSTRIPKIQQMLKEMFDGKEPCKGVNPDEAVAYGAAVQGGILSGEGGEETGGILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQIFTTYQDQQPTVSIKVYEGERSLTKDCRELGRFELSGIPPAPRGVPQIEVTFEVDANGILHEFAEEDRQEKIEAALKEALDWLDDNQNADKDEYNEKLRGVEAVCNPVIKQVYEEWWGFFQF* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1920619 1924241 + Vvi14g194 Vvi14g194 775261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g194 576 CDD HSPA5-like_NBD 33 406 IPR042050 -
Vvi14g194 576 Gene3D Actin; Chain A, domain 4 257 340 - -
Vvi14g194 576 PANTHER HEAT SHOCK PROTEIN 70KDA 20 520 IPR013126 GO:0005524|GO:0140662
Vvi14g194 576 PANTHER HEAT SHOCK PROTEIN 70KDA 518 571 IPR013126 GO:0005524|GO:0140662
Vvi14g194 576 Gene3D - 218 391 - -
Vvi14g194 576 ProSitePatterns Heat shock hsp70 proteins family signature 3. 362 376 IPR018181 -
Vvi14g194 576 ProSitePatterns Heat shock hsp70 proteins family signature 1. 38 45 IPR018181 -
Vvi14g194 576 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 415 530 IPR029047 -
Vvi14g194 576 PANTHER BNAC07G48050D PROTEIN 518 571 - -
Vvi14g194 576 PANTHER BNAC07G48050D PROTEIN 20 520 - -
Vvi14g194 576 SUPERFAMILY Actin-like ATPase domain 219 410 IPR043129 -
Vvi14g194 576 ProSitePatterns Heat shock hsp70 proteins family signature 2. 225 238 IPR018181 -
Vvi14g194 576 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 407 569 IPR029047 -
Vvi14g194 576 Pfam Hsp70 protein 35 527 IPR013126 GO:0005524|GO:0140662
Vvi14g194 576 Gene3D - 36 406 - -
Vvi14g194 576 Coils Coil 281 301 - -
Vvi14g194 576 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 514 569 IPR029048 -
Vvi14g194 576 SUPERFAMILY Actin-like ATPase domain 33 217 IPR043129 -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 34 47 - -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 62 74 - -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 84 92 - -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 172 192 - -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 231 241 - -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 359 375 - -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 391 411 - -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 418 437 - -
Vvi14g194 576 PRINTS 70kDa heat shock protein signature 499 515 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g194 K09490 - vvi:100263033 1040.41