Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g205 ATGTCAAACATAACAGCTGGGGATGGTGGGAGCTTCTCTTCTGGAACTAATGGTGGAGAAGAAGTTCAGCAGCAGCCTGTCAACAACCTCCATGGCTTAAGCTCATCAGTGCCTTCATCTACAAGTAACAACAGCAATGGCTCCATCTCTCAGCAGCAGCCTCCACCAGCCAAGAAGAAAAGGAATCTCCCAGGAAACCCAGACCCAAGTGCAGAAGTGATAGCTCTATCACCAACTACCCTAATGGCAACAAACAGGTTTGTGTGTGAGATTTGTAACAAAGGGTTCCAAAGAGATCAAAACCTTCAGTTACACAGGCGAGGGCATAATCTGCCATGGAAGCTGAGGCAAAGATCAAGCACAGAGATCAGGAAAAGGGTGTATGTATGCCCAGAACCCTCATGCGTTCACCATAACCCAGCTCGAGCACTAGGTGATCTTACAGGGATAAAGAAGCATTTCTGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAGTATGCAGTTCAGTCTGACTGGAAAGCCCACTCCAAGACCTGTGGCACCAGGGAGTATAAGTGTGACTGTGGCACTATCTTCTCCAGAAGAGATAGCTTCATCACTCATAGGGCTTTTTGTGATGCCCTAGCTGAAGAAAACACCAAAGTGAATCAAGGTCTAGCAAACACCATGAGACGCAACTTACAAATACAAGGCCAGGTCTCTGAGCTGTTGTCCTCCATGCCTCTAAACAACAACCCTAATTCAACAATGGGGTTGTCCGAGTTTACTCACTCTGATTCCAAAAACCATCTTAAAACCCTACCCCATGAGCCCATGCCTGTACCTCCAAAGCCCTTGAACATGGCAGCTGCTGGCATGTTCTCAACCACCTCTGGAAGCCTCTTTGGGTGCCCAATAACCGCTTCCTTTGAAAATGGACAGCAACTACCGCCGCCGCCAGCGTCAACGCTCATGTCTGCAACGGCACTGCTGCAGAAAGCAGCCCAAATGGGAGCAACTGCAAGTACTAAAATGAATAACTCTCCACCAAAGGGCTTTGTGACAAGCATGGCTCCAACCCCATTTGGTGGGATACTTCTACAGAAGAACAGTAGCTCAAATGATCACCACCTCCAAGCTGATCCAACCCAGTTTCTAAACCAGTTTTTTTATCAGAATGATGGGGCTGAGAGTGAGGTGATGAGCGAAATGGGGATGTTCTCAGGACTGTTTGATCAAAACCATGGACTGTTCAAGAACATGGAGCATCATGAGCATAGCAACAGTAACAACATTTTGGCTGCTAAAACTACAAATCCAGGGTTAAGTAGCACTCCAAGAAATGGAAAAACTGATACGATGACAGTCGATTTCTTGGGGATCGGAGGAGCCCGGCCTGGGAATTTCCATGGACAGCAGCAGCAGCAGCAAGAAATGTTTGAAGGAATGAATATAAACCACCCAAGAATGCAAGGTTTTAGTAGCTTTGAGCAGCACATCGCACATGGGCAAGCAGCAATGGAGAAGACCATGTGGGAGGCTTGA 1542 47.28 MSNITAGDGGSFSSGTNGGEEVQQQPVNNLHGLSSSVPSSTSNNSNGSISQQQPPPAKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENTKVNQGLANTMRRNLQIQGQVSELLSSMPLNNNPNSTMGLSEFTHSDSKNHLKTLPHEPMPVPPKPLNMAAAGMFSTTSGSLFGCPITASFENGQQLPPPPASTLMSATALLQKAAQMGATASTKMNNSPPKGFVTSMAPTPFGGILLQKNSSSNDHHLQADPTQFLNQFFYQNDGAESEVMSEMGMFSGLFDQNHGLFKNMEHHEHSNSNNILAAKTTNPGLSSTPRNGKTDTMTVDFLGIGGARPGNFHGQQQQQQEMFEGMNINHPRMQGFSSFEQHIAHGQAAMEKTMWEA* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2059335 2063219 - Vvi14g205 Vvi14g205 775272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g205 513 MobiDBLite consensus disorder prediction 1 72 - -
Vvi14g205 513 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vvi14g205 513 MobiDBLite consensus disorder prediction 1 57 - -
Vvi14g205 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 479 - -
Vvi14g205 513 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Vvi14g205 513 SMART c2h2final6 87 109 IPR013087 -
Vvi14g205 513 SMART c2h2final6 128 158 IPR013087 -
Vvi14g205 513 SMART c2h2final6 163 183 IPR013087 -
Vvi14g205 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Vvi14g205 513 Gene3D Classic Zinc Finger 66 132 - -
Vvi14g205 513 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Vvi14g205 513 Gene3D Classic Zinc Finger 142 221 - -
Vvi14g205 513 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 479 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g241 Vvi14g205 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13993 PF00096 zf-C2H2 0.0052 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g205 - - vvi:100263074 1000.73