Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g217 ATGGTTGATGAGCAGGATCATTTGCTGCCTATTGCCAACGTGGGCCGGATCATGAAGCAAATCCTGCCACCAAGAGCCAAGATCTCCAAAGAAGGCAAAGAAACAATGCAAGAGTGTGCATCTGAGTTCATAAGTTTTGTTACTGGTGAAGCATCTGACAAGTGTCACAAAGAGAACCGCAAGACGGTGAACGGAGATGACATTTGTTGGGCTCTGAGTGCACTAGGATTTGATGACTATGCTGAGGCTATATTAAGGTACTTACATAAATATAGGGAGTTTGAAAGAGAGAGAGCCAACCAAAACAAAGTTGGTGGCAGTGAAGACAAAGATGAAGCATCAAACTGTAAATATATCCAAGCTGGGAAGCAAACTGTAATTCCTCCTCCATTAGAGTGCAGAGTTATCAAGAAGGGTAATAGCTCTCTTACAAAGCCATCTTAA 444 42.57 MVDEQDHLLPIANVGRIMKQILPPRAKISKEGKETMQECASEFISFVTGEASDKCHKENRKTVNGDDICWALSALGFDDYAEAILRYLHKYREFERERANQNKVGGSEDKDEASNCKYIQAGKQTVIPPPLECRVIKKGNSSLTKPS* 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2475205 2475649 + Vvi14g217 Vvi14g217 775284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g217 147 SUPERFAMILY Histone-fold 5 113 IPR009072 GO:0046982
Vvi14g217 147 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Vvi14g217 147 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vvi14g217 147 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vvi14g217 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 72 IPR003958 -
Vvi14g217 147 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi14g217 147 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 121 - -
Vvi14g217 147 Gene3D Histone, subunit A 1 126 IPR009072 GO:0046982
Vvi14g217 147 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g243 Vvi14g217 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13995 PF00808 CBFD_NFYB_HMF 3.30E-25 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g217 K08065 - vvi:100249483 302.753